Hb_010368_080

Information

Type -
Description -
Location Contig10368: 50620-55323
Sequence    

Annotation

kegg
ID rcu:RCOM_1442490
description hypothetical protein
nr
ID XP_012067463.1
description PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LCW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26962 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01394: 53809-55301 , PASA_asmbl_01396: 50624-55301 , PASA_asmbl_01397: 52650-52824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010368_080 0.0 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
2 Hb_012305_140 0.0895348955 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
3 Hb_001369_030 0.1091575436 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
4 Hb_004267_060 0.1102046523 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_004526_010 0.1125588122 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
6 Hb_000796_120 0.1140597717 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
7 Hb_004837_220 0.1159287648 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
8 Hb_000454_140 0.1165529564 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
9 Hb_006132_040 0.119047573 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
10 Hb_003992_180 0.1200900785 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
11 Hb_004236_030 0.1213035129 - - unknown [Lotus japonicus]
12 Hb_001009_120 0.1218214211 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
13 Hb_000062_360 0.1259670189 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
14 Hb_005694_130 0.1266476177 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
15 Hb_000890_010 0.1277344897 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000212_300 0.1283655895 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
17 Hb_005394_010 0.1286887663 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
18 Hb_000076_100 0.1295633149 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
19 Hb_000152_760 0.1318925406 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002107_100 0.1323242528 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_010368_080 Hb_010368_080 Hb_012305_140 Hb_012305_140 Hb_010368_080--Hb_012305_140 Hb_001369_030 Hb_001369_030 Hb_010368_080--Hb_001369_030 Hb_004267_060 Hb_004267_060 Hb_010368_080--Hb_004267_060 Hb_004526_010 Hb_004526_010 Hb_010368_080--Hb_004526_010 Hb_000796_120 Hb_000796_120 Hb_010368_080--Hb_000796_120 Hb_004837_220 Hb_004837_220 Hb_010368_080--Hb_004837_220 Hb_005694_130 Hb_005694_130 Hb_012305_140--Hb_005694_130 Hb_003992_180 Hb_003992_180 Hb_012305_140--Hb_003992_180 Hb_000454_140 Hb_000454_140 Hb_012305_140--Hb_000454_140 Hb_007849_050 Hb_007849_050 Hb_012305_140--Hb_007849_050 Hb_002609_190 Hb_002609_190 Hb_012305_140--Hb_002609_190 Hb_000086_430 Hb_000086_430 Hb_001369_030--Hb_000086_430 Hb_000212_300 Hb_000212_300 Hb_001369_030--Hb_000212_300 Hb_000062_360 Hb_000062_360 Hb_001369_030--Hb_000062_360 Hb_001009_120 Hb_001009_120 Hb_001369_030--Hb_001009_120 Hb_001369_030--Hb_004267_060 Hb_000836_540 Hb_000836_540 Hb_001369_030--Hb_000836_540 Hb_000260_770 Hb_000260_770 Hb_004267_060--Hb_000260_770 Hb_004267_060--Hb_001009_120 Hb_004267_060--Hb_000062_360 Hb_004267_060--Hb_000086_430 Hb_001621_110 Hb_001621_110 Hb_004267_060--Hb_001621_110 Hb_004319_050 Hb_004319_050 Hb_004526_010--Hb_004319_050 Hb_004526_010--Hb_000796_120 Hb_030545_030 Hb_030545_030 Hb_004526_010--Hb_030545_030 Hb_004526_010--Hb_003992_180 Hb_009486_160 Hb_009486_160 Hb_004526_010--Hb_009486_160 Hb_159295_010 Hb_159295_010 Hb_004526_010--Hb_159295_010 Hb_000796_120--Hb_004319_050 Hb_002107_100 Hb_002107_100 Hb_000796_120--Hb_002107_100 Hb_000418_050 Hb_000418_050 Hb_000796_120--Hb_000418_050 Hb_000261_280 Hb_000261_280 Hb_000796_120--Hb_000261_280 Hb_009178_010 Hb_009178_010 Hb_000796_120--Hb_009178_010 Hb_163968_010 Hb_163968_010 Hb_004837_220--Hb_163968_010 Hb_005000_140 Hb_005000_140 Hb_004837_220--Hb_005000_140 Hb_004837_220--Hb_004267_060 Hb_001085_300 Hb_001085_300 Hb_004837_220--Hb_001085_300 Hb_000000_340 Hb_000000_340 Hb_004837_220--Hb_000000_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3894 99.2183 112.971 27.5654 23.9268 28.0872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1211 15.1526 13.2841 33.6608 21.6981

CAGE analysis