Hb_007849_050

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig7849: 46592-57030
Sequence    

Annotation

kegg
ID rcu:RCOM_0609080
description transcription factor, putative
nr
ID XP_012089330.1
description PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
swissprot
ID C0SUT9
description Putative lysine-specific demethylase JMJ16 OS=Arabidopsis thaliana GN=JMJ16 PE=2 SV=1
trembl
ID A0A067JLR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23546 PE=4 SV=1
Gene Ontology
ID GO:0005634
description lysine-specific demethylase jmj16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58070: 46604-57063 , PASA_asmbl_58073: 57162-57496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007849_050 0.0 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
2 Hb_000454_140 0.0750113397 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
3 Hb_003001_070 0.0776588446 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
4 Hb_012305_140 0.0916878017 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
5 Hb_005694_130 0.0993580183 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
6 Hb_000163_230 0.1032706542 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
7 Hb_004324_060 0.1055941165 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
8 Hb_000421_110 0.1069882292 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
9 Hb_003992_180 0.1071105642 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
10 Hb_005496_160 0.108579735 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
11 Hb_001410_130 0.108623573 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
12 Hb_000045_260 0.1111756667 - - protein with unknown function [Ricinus communis]
13 Hb_007313_070 0.1123131007 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
14 Hb_003895_020 0.1131307573 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
15 Hb_001009_090 0.1144555922 - - CDK protein [Hevea brasiliensis]
16 Hb_002249_050 0.1154290792 - - Auxin response factor, putative [Ricinus communis]
17 Hb_002897_050 0.116220974 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
18 Hb_000609_110 0.1183963861 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
19 Hb_159295_010 0.1186153819 - - hypothetical protein RCOM_1520720 [Ricinus communis]
20 Hb_005499_010 0.1190932167 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]

Gene co-expression network

sample Hb_007849_050 Hb_007849_050 Hb_000454_140 Hb_000454_140 Hb_007849_050--Hb_000454_140 Hb_003001_070 Hb_003001_070 Hb_007849_050--Hb_003001_070 Hb_012305_140 Hb_012305_140 Hb_007849_050--Hb_012305_140 Hb_005694_130 Hb_005694_130 Hb_007849_050--Hb_005694_130 Hb_000163_230 Hb_000163_230 Hb_007849_050--Hb_000163_230 Hb_004324_060 Hb_004324_060 Hb_007849_050--Hb_004324_060 Hb_000454_140--Hb_000163_230 Hb_000045_260 Hb_000045_260 Hb_000454_140--Hb_000045_260 Hb_000454_140--Hb_012305_140 Hb_000454_140--Hb_005694_130 Hb_005499_010 Hb_005499_010 Hb_000454_140--Hb_005499_010 Hb_003001_070--Hb_005694_130 Hb_003001_070--Hb_000454_140 Hb_000609_110 Hb_000609_110 Hb_003001_070--Hb_000609_110 Hb_003001_070--Hb_012305_140 Hb_003992_180 Hb_003992_180 Hb_003001_070--Hb_003992_180 Hb_012305_140--Hb_005694_130 Hb_012305_140--Hb_003992_180 Hb_010368_080 Hb_010368_080 Hb_012305_140--Hb_010368_080 Hb_002609_190 Hb_002609_190 Hb_012305_140--Hb_002609_190 Hb_005694_130--Hb_000609_110 Hb_005694_130--Hb_003992_180 Hb_000805_200 Hb_000805_200 Hb_005694_130--Hb_000805_200 Hb_001009_090 Hb_001009_090 Hb_000163_230--Hb_001009_090 Hb_000163_230--Hb_000045_260 Hb_003078_030 Hb_003078_030 Hb_000163_230--Hb_003078_030 Hb_000671_060 Hb_000671_060 Hb_000163_230--Hb_000671_060 Hb_000186_200 Hb_000186_200 Hb_000163_230--Hb_000186_200 Hb_003895_020 Hb_003895_020 Hb_004324_060--Hb_003895_020 Hb_002774_150 Hb_002774_150 Hb_004324_060--Hb_002774_150 Hb_172421_010 Hb_172421_010 Hb_004324_060--Hb_172421_010 Hb_000866_080 Hb_000866_080 Hb_004324_060--Hb_000866_080 Hb_002942_110 Hb_002942_110 Hb_004324_060--Hb_002942_110 Hb_012038_010 Hb_012038_010 Hb_004324_060--Hb_012038_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.24142 17.5454 10.7097 4.80353 3.2253 2.84209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10531 1.58524 2.76506 3.95645 5.80466

CAGE analysis