Hb_003001_070

Information

Type transcription factor
Description TF Family: ERF
Location Contig3001: 67724-75423
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24750g
description POPTRDRAFT_553203; hypothetical protein
nr
ID XP_006386876.1
description hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
swissprot
ID Q56XP9
description Ethylene-responsive transcription factor-like protein At4g13040 OS=Arabidopsis thaliana GN=At4g13040 PE=2 SV=2
trembl
ID B9GQL7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s24750g PE=4 SV=2
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor-like protein at4g13040

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31660: 67992-75180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003001_070 0.0 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
2 Hb_005694_130 0.0621655192 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
3 Hb_007849_050 0.0776588446 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
4 Hb_000454_140 0.0910863477 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
5 Hb_000609_110 0.0933372773 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
6 Hb_012305_140 0.1062096127 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
7 Hb_003992_180 0.1079752835 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
8 Hb_000045_260 0.1089085446 - - protein with unknown function [Ricinus communis]
9 Hb_011631_010 0.1104989231 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
10 Hb_000805_200 0.1113894449 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
11 Hb_005499_010 0.1156472353 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
12 Hb_002056_100 0.1194672172 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
13 Hb_000836_540 0.1195612192 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
14 Hb_007313_070 0.1223554293 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
15 Hb_002897_050 0.1226193344 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
16 Hb_048755_020 0.1231489197 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
17 Hb_006615_030 0.1260535596 - - prolyl oligopeptidase family protein [Populus trichocarpa]
18 Hb_002107_060 0.127429972 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
19 Hb_002400_160 0.1283936244 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
20 Hb_091226_010 0.1318910549 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003001_070 Hb_003001_070 Hb_005694_130 Hb_005694_130 Hb_003001_070--Hb_005694_130 Hb_007849_050 Hb_007849_050 Hb_003001_070--Hb_007849_050 Hb_000454_140 Hb_000454_140 Hb_003001_070--Hb_000454_140 Hb_000609_110 Hb_000609_110 Hb_003001_070--Hb_000609_110 Hb_012305_140 Hb_012305_140 Hb_003001_070--Hb_012305_140 Hb_003992_180 Hb_003992_180 Hb_003001_070--Hb_003992_180 Hb_005694_130--Hb_000609_110 Hb_005694_130--Hb_012305_140 Hb_005694_130--Hb_003992_180 Hb_005694_130--Hb_000454_140 Hb_000805_200 Hb_000805_200 Hb_005694_130--Hb_000805_200 Hb_007849_050--Hb_000454_140 Hb_007849_050--Hb_012305_140 Hb_007849_050--Hb_005694_130 Hb_000163_230 Hb_000163_230 Hb_007849_050--Hb_000163_230 Hb_004324_060 Hb_004324_060 Hb_007849_050--Hb_004324_060 Hb_000454_140--Hb_000163_230 Hb_000045_260 Hb_000045_260 Hb_000454_140--Hb_000045_260 Hb_000454_140--Hb_012305_140 Hb_005499_010 Hb_005499_010 Hb_000454_140--Hb_005499_010 Hb_027380_210 Hb_027380_210 Hb_000609_110--Hb_027380_210 Hb_000836_540 Hb_000836_540 Hb_000609_110--Hb_000836_540 Hb_000609_110--Hb_003992_180 Hb_000609_110--Hb_000805_200 Hb_012305_140--Hb_003992_180 Hb_010368_080 Hb_010368_080 Hb_012305_140--Hb_010368_080 Hb_002609_190 Hb_002609_190 Hb_012305_140--Hb_002609_190 Hb_030545_030 Hb_030545_030 Hb_003992_180--Hb_030545_030 Hb_006615_030 Hb_006615_030 Hb_003992_180--Hb_006615_030 Hb_004526_010 Hb_004526_010 Hb_003992_180--Hb_004526_010 Hb_001558_060 Hb_001558_060 Hb_003992_180--Hb_001558_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.82566 34.2428 23.9751 6.75206 7.19234 5.25031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.35598 4.24333 5.41079 5.33279 13.6319

CAGE analysis