Hb_000836_540

Information

Type -
Description -
Location Contig836: 443782-447312
Sequence    

Annotation

kegg
ID tcc:TCM_005248
description S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
nr
ID XP_007051690.1
description S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
swissprot
ID Q9M313
description RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2 SV=1
trembl
ID A0A061DTX0
description S-adenosyl-L-methionine-dependent methyltransferases superfamily protein OS=Theobroma cacao GN=TCM_005248 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl67

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59989: 443700-444678
cDNA
(Sanger)
(ID:Location)		 009_B08.ab1: 443700-444490 , 030_C22.ab1: 443700-444414 , 039_J07.ab1: 443700-444479 , 053_J12.ab1: 443702-444457

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_540 0.0 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
2 Hb_000609_110 0.0774370859 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
3 Hb_005694_130 0.0938814069 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
4 Hb_001369_030 0.094716131 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
5 Hb_003925_060 0.0955115396 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
6 Hb_000453_230 0.0980533531 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_002056_100 0.0988186334 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
8 Hb_003992_180 0.0988932493 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
9 Hb_027380_210 0.0999809903 - - PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
10 Hb_001558_060 0.1052899324 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
11 Hb_000805_200 0.1054011598 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
12 Hb_009178_010 0.109916218 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
13 Hb_005873_020 0.110511861 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
14 Hb_002686_410 0.1138440304 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
15 Hb_000030_140 0.1142441822 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
16 Hb_001488_210 0.1146771159 - - PREDICTED: protein RIK [Jatropha curcas]
17 Hb_000300_250 0.1164561725 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
18 Hb_161549_010 0.1184492548 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005539_040 0.1184969573 - - PREDICTED: RNA-binding protein 25 isoform X3 [Jatropha curcas]
20 Hb_000245_150 0.1193037276 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]

Gene co-expression network

sample Hb_000836_540 Hb_000836_540 Hb_000609_110 Hb_000609_110 Hb_000836_540--Hb_000609_110 Hb_005694_130 Hb_005694_130 Hb_000836_540--Hb_005694_130 Hb_001369_030 Hb_001369_030 Hb_000836_540--Hb_001369_030 Hb_003925_060 Hb_003925_060 Hb_000836_540--Hb_003925_060 Hb_000453_230 Hb_000453_230 Hb_000836_540--Hb_000453_230 Hb_002056_100 Hb_002056_100 Hb_000836_540--Hb_002056_100 Hb_000609_110--Hb_005694_130 Hb_027380_210 Hb_027380_210 Hb_000609_110--Hb_027380_210 Hb_003001_070 Hb_003001_070 Hb_000609_110--Hb_003001_070 Hb_003992_180 Hb_003992_180 Hb_000609_110--Hb_003992_180 Hb_000805_200 Hb_000805_200 Hb_000609_110--Hb_000805_200 Hb_005694_130--Hb_003001_070 Hb_012305_140 Hb_012305_140 Hb_005694_130--Hb_012305_140 Hb_005694_130--Hb_003992_180 Hb_000454_140 Hb_000454_140 Hb_005694_130--Hb_000454_140 Hb_005694_130--Hb_000805_200 Hb_000086_430 Hb_000086_430 Hb_001369_030--Hb_000086_430 Hb_000212_300 Hb_000212_300 Hb_001369_030--Hb_000212_300 Hb_000062_360 Hb_000062_360 Hb_001369_030--Hb_000062_360 Hb_001009_120 Hb_001009_120 Hb_001369_030--Hb_001009_120 Hb_004267_060 Hb_004267_060 Hb_001369_030--Hb_004267_060 Hb_009178_010 Hb_009178_010 Hb_003925_060--Hb_009178_010 Hb_001396_070 Hb_001396_070 Hb_003925_060--Hb_001396_070 Hb_000640_190 Hb_000640_190 Hb_003925_060--Hb_000640_190 Hb_002249_020 Hb_002249_020 Hb_003925_060--Hb_002249_020 Hb_001277_340 Hb_001277_340 Hb_003925_060--Hb_001277_340 Hb_002686_410 Hb_002686_410 Hb_003925_060--Hb_002686_410 Hb_004837_020 Hb_004837_020 Hb_000453_230--Hb_004837_020 Hb_000453_230--Hb_027380_210 Hb_002447_050 Hb_002447_050 Hb_000453_230--Hb_002447_050 Hb_000665_150 Hb_000665_150 Hb_000453_230--Hb_000665_150 Hb_161549_010 Hb_161549_010 Hb_000453_230--Hb_161549_010 Hb_000806_030 Hb_000806_030 Hb_002056_100--Hb_000806_030 Hb_000645_130 Hb_000645_130 Hb_002056_100--Hb_000645_130 Hb_000500_300 Hb_000500_300 Hb_002056_100--Hb_000500_300 Hb_009302_030 Hb_009302_030 Hb_002056_100--Hb_009302_030 Hb_004659_090 Hb_004659_090 Hb_002056_100--Hb_004659_090 Hb_000030_140 Hb_000030_140 Hb_002056_100--Hb_000030_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.90777 4.41105 4.96288 1.33723 1.79831 1.18166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.740431 0.886425 0.570413 1.43605 3.12257

CAGE analysis