Hb_004837_020

Information

Type -
Description -
Location Contig4837: 47271-53252
Sequence    

Annotation

kegg
ID rcu:RCOM_1577670
description GTP-binding protein enga, putative
nr
ID XP_012089992.1
description PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
swissprot
ID Q8YZH7
description GTPase Der OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=der PE=3 SV=1
trembl
ID A0A067JDZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25917 PE=3 SV=1
Gene Ontology
ID GO:0009507
description gtpase der

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44858: 47484-49569 , PASA_asmbl_44859: 50012-52718 , PASA_asmbl_44861: 53708-58797 , PASA_asmbl_44862: 53864-58777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_020 0.0 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
2 Hb_000453_230 0.0794789615 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_000665_070 0.0937508591 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Jatropha curcas]
4 Hb_000771_170 0.0984849555 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_000665_150 0.100509641 - - heparanase, putative [Ricinus communis]
6 Hb_007576_180 0.1015618218 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
7 Hb_002447_050 0.103435933 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000300_560 0.1042418412 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
9 Hb_000482_050 0.1077099775 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
10 Hb_002249_030 0.1086766908 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
11 Hb_001396_020 0.1090062897 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
12 Hb_004629_030 0.1115004552 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_005701_090 0.112094652 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000878_160 0.121449384 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
15 Hb_002411_190 0.1215948 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_000331_340 0.1217893647 - - PREDICTED: uncharacterized protein LOC105640234 [Jatropha curcas]
17 Hb_029552_020 0.122097884 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000260_160 0.1249822997 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
19 Hb_002600_070 0.1252732265 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
20 Hb_004884_180 0.1263864673 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004837_020 Hb_004837_020 Hb_000453_230 Hb_000453_230 Hb_004837_020--Hb_000453_230 Hb_000665_070 Hb_000665_070 Hb_004837_020--Hb_000665_070 Hb_000771_170 Hb_000771_170 Hb_004837_020--Hb_000771_170 Hb_000665_150 Hb_000665_150 Hb_004837_020--Hb_000665_150 Hb_007576_180 Hb_007576_180 Hb_004837_020--Hb_007576_180 Hb_002447_050 Hb_002447_050 Hb_004837_020--Hb_002447_050 Hb_027380_210 Hb_027380_210 Hb_000453_230--Hb_027380_210 Hb_000453_230--Hb_002447_050 Hb_000453_230--Hb_000665_150 Hb_161549_010 Hb_161549_010 Hb_000453_230--Hb_161549_010 Hb_000836_540 Hb_000836_540 Hb_000453_230--Hb_000836_540 Hb_004162_220 Hb_004162_220 Hb_000665_070--Hb_004162_220 Hb_000260_160 Hb_000260_160 Hb_000665_070--Hb_000260_160 Hb_013968_010 Hb_013968_010 Hb_000665_070--Hb_013968_010 Hb_004629_030 Hb_004629_030 Hb_000665_070--Hb_004629_030 Hb_001484_090 Hb_001484_090 Hb_000665_070--Hb_001484_090 Hb_002600_070 Hb_002600_070 Hb_000771_170--Hb_002600_070 Hb_004225_040 Hb_004225_040 Hb_000771_170--Hb_004225_040 Hb_000562_070 Hb_000562_070 Hb_000771_170--Hb_000562_070 Hb_001472_160 Hb_001472_160 Hb_000771_170--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_000771_170--Hb_004884_180 Hb_000482_050 Hb_000482_050 Hb_000771_170--Hb_000482_050 Hb_000665_150--Hb_000260_160 Hb_000665_150--Hb_000665_070 Hb_003529_140 Hb_003529_140 Hb_000665_150--Hb_003529_140 Hb_000665_150--Hb_004162_220 Hb_000803_220 Hb_000803_220 Hb_007576_180--Hb_000803_220 Hb_010984_010 Hb_010984_010 Hb_007576_180--Hb_010984_010 Hb_007576_180--Hb_004629_030 Hb_001425_010 Hb_001425_010 Hb_007576_180--Hb_001425_010 Hb_018043_020 Hb_018043_020 Hb_007576_180--Hb_018043_020 Hb_001663_130 Hb_001663_130 Hb_002447_050--Hb_001663_130 Hb_029552_020 Hb_029552_020 Hb_002447_050--Hb_029552_020 Hb_000529_130 Hb_000529_130 Hb_002447_050--Hb_000529_130 Hb_000331_340 Hb_000331_340 Hb_002447_050--Hb_000331_340 Hb_000300_560 Hb_000300_560 Hb_002447_050--Hb_000300_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97975 4.10851 7.20262 2.07762 1.77113 2.06506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.841344 0.752305 0.7446 3.66461 7.27943

CAGE analysis