Hb_000260_160

Information

Type transcription factor
Description TF Family: GNAT
Location Contig260: 110952-130911
Sequence    

Annotation

kegg
ID rcu:RCOM_0126270
description ATP binding protein, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002531806.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID C0LGD7
description Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=2 SV=2
trembl
ID B9T0N7
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0126270 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable lrr receptor-like serine threonine-protein kinase at1g06840 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26959: 111040-114882 , PASA_asmbl_26960: 111040-116077 , PASA_asmbl_26961: 114909-115991 , PASA_asmbl_26962: 118112-118436 , PASA_asmbl_26963: 118112-118514 , PASA_asmbl_26964: 118952-120900 , PASA_asmbl_26966: 122412-130671
cDNA
(Sanger)
(ID:Location)		 034_C19.ab1: 111075-115845

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_160 0.0 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
2 Hb_011188_010 0.0962367424 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
3 Hb_008120_040 0.0963244562 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
4 Hb_000933_110 0.0969853173 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
5 Hb_004577_010 0.0978622197 - - PREDICTED: transmembrane protein 45A [Prunus mume]
6 Hb_013968_010 0.1022271029 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
7 Hb_004117_270 0.1026133651 - - -
8 Hb_004162_220 0.1036165131 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
9 Hb_000665_150 0.1039590956 - - heparanase, putative [Ricinus communis]
10 Hb_000300_560 0.1054233939 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
11 Hb_000594_060 0.1055756664 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
12 Hb_002383_050 0.1069327434 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
13 Hb_000665_070 0.1075206033 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Jatropha curcas]
14 Hb_002447_050 0.1091892521 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000979_140 0.1102766898 - - kinase family protein [Populus trichocarpa]
16 Hb_004052_110 0.1113302921 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
17 Hb_003058_140 0.1115482032 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000453_230 0.115323276 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_000477_070 0.1165904842 - - histone h2a, putative [Ricinus communis]
20 Hb_003725_010 0.1178158207 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_160 Hb_000260_160 Hb_011188_010 Hb_011188_010 Hb_000260_160--Hb_011188_010 Hb_008120_040 Hb_008120_040 Hb_000260_160--Hb_008120_040 Hb_000933_110 Hb_000933_110 Hb_000260_160--Hb_000933_110 Hb_004577_010 Hb_004577_010 Hb_000260_160--Hb_004577_010 Hb_013968_010 Hb_013968_010 Hb_000260_160--Hb_013968_010 Hb_004117_270 Hb_004117_270 Hb_000260_160--Hb_004117_270 Hb_009078_020 Hb_009078_020 Hb_011188_010--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_011188_010--Hb_001059_060 Hb_000300_560 Hb_000300_560 Hb_011188_010--Hb_000300_560 Hb_000477_070 Hb_000477_070 Hb_011188_010--Hb_000477_070 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060 Hb_011188_010--Hb_004577_010 Hb_000673_010 Hb_000673_010 Hb_008120_040--Hb_000673_010 Hb_015807_080 Hb_015807_080 Hb_008120_040--Hb_015807_080 Hb_001766_070 Hb_001766_070 Hb_008120_040--Hb_001766_070 Hb_000979_140 Hb_000979_140 Hb_008120_040--Hb_000979_140 Hb_000506_110 Hb_000506_110 Hb_008120_040--Hb_000506_110 Hb_004223_270 Hb_004223_270 Hb_000933_110--Hb_004223_270 Hb_000334_050 Hb_000334_050 Hb_000933_110--Hb_000334_050 Hb_000446_040 Hb_000446_040 Hb_000933_110--Hb_000446_040 Hb_004346_040 Hb_004346_040 Hb_000933_110--Hb_004346_040 Hb_027445_100 Hb_027445_100 Hb_000933_110--Hb_027445_100 Hb_004577_010--Hb_000300_560 Hb_004162_220 Hb_004162_220 Hb_004577_010--Hb_004162_220 Hb_001663_130 Hb_001663_130 Hb_004577_010--Hb_001663_130 Hb_002686_410 Hb_002686_410 Hb_004577_010--Hb_002686_410 Hb_003058_140 Hb_003058_140 Hb_004577_010--Hb_003058_140 Hb_001821_060 Hb_001821_060 Hb_013968_010--Hb_001821_060 Hb_013968_010--Hb_011188_010 Hb_002383_050 Hb_002383_050 Hb_013968_010--Hb_002383_050 Hb_003226_090 Hb_003226_090 Hb_013968_010--Hb_003226_090 Hb_001514_240 Hb_001514_240 Hb_013968_010--Hb_001514_240 Hb_013968_010--Hb_004346_040 Hb_025787_010 Hb_025787_010 Hb_004117_270--Hb_025787_010 Hb_004117_270--Hb_015807_080 Hb_012799_150 Hb_012799_150 Hb_004117_270--Hb_012799_150 Hb_004117_270--Hb_008120_040 Hb_104920_010 Hb_104920_010 Hb_004117_270--Hb_104920_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71733 9.01714 13.6043 5.35386 2.23206 2.26541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64157 3.15049 1.2329 5.75335 11.7915

CAGE analysis