Hb_004117_270

Information

Type -
Description -
Location Contig4117: 180844-185271
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40777: 180948-184266 , PASA_asmbl_40778: 183977-185033 , PASA_asmbl_40779: 180948-184266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_270 0.0 - - -
2 Hb_025787_010 0.0797502125 - - PREDICTED: histone H1.2-like [Jatropha curcas]
3 Hb_000260_160 0.1026133651 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
4 Hb_015807_080 0.104077121 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
5 Hb_012799_150 0.1053258666 - - PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 13 [Jatropha curcas]
6 Hb_008120_040 0.1064655586 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
7 Hb_104920_010 0.1080573184 - - hypothetical protein VITISV_031859 [Vitis vinifera]
8 Hb_003725_010 0.1108304175 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
9 Hb_024714_070 0.1131470864 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
10 Hb_017914_010 0.1132775073 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
11 Hb_000161_240 0.1176829064 - - PREDICTED: ion channel DMI1-like isoform X1 [Jatropha curcas]
12 Hb_000979_140 0.1224395629 - - kinase family protein [Populus trichocarpa]
13 Hb_003417_030 0.125678916 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
14 Hb_002383_050 0.1297394114 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
15 Hb_004577_010 0.1359389071 - - PREDICTED: transmembrane protein 45A [Prunus mume]
16 Hb_000404_030 0.1382216917 - - PREDICTED: protein NAP1 [Jatropha curcas]
17 Hb_004162_220 0.139424637 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
18 Hb_001729_020 0.139567147 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
19 Hb_001269_370 0.1397811992 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
20 Hb_023091_010 0.1411424037 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]

Gene co-expression network

sample Hb_004117_270 Hb_004117_270 Hb_025787_010 Hb_025787_010 Hb_004117_270--Hb_025787_010 Hb_000260_160 Hb_000260_160 Hb_004117_270--Hb_000260_160 Hb_015807_080 Hb_015807_080 Hb_004117_270--Hb_015807_080 Hb_012799_150 Hb_012799_150 Hb_004117_270--Hb_012799_150 Hb_008120_040 Hb_008120_040 Hb_004117_270--Hb_008120_040 Hb_104920_010 Hb_104920_010 Hb_004117_270--Hb_104920_010 Hb_025787_010--Hb_104920_010 Hb_025787_010--Hb_012799_150 Hb_003417_030 Hb_003417_030 Hb_025787_010--Hb_003417_030 Hb_000161_240 Hb_000161_240 Hb_025787_010--Hb_000161_240 Hb_054865_050 Hb_054865_050 Hb_025787_010--Hb_054865_050 Hb_011188_010 Hb_011188_010 Hb_000260_160--Hb_011188_010 Hb_000260_160--Hb_008120_040 Hb_000933_110 Hb_000933_110 Hb_000260_160--Hb_000933_110 Hb_004577_010 Hb_004577_010 Hb_000260_160--Hb_004577_010 Hb_013968_010 Hb_013968_010 Hb_000260_160--Hb_013968_010 Hb_015807_080--Hb_008120_040 Hb_000086_640 Hb_000086_640 Hb_015807_080--Hb_000086_640 Hb_015807_080--Hb_104920_010 Hb_000753_140 Hb_000753_140 Hb_015807_080--Hb_000753_140 Hb_005941_020 Hb_005941_020 Hb_015807_080--Hb_005941_020 Hb_003725_010 Hb_003725_010 Hb_012799_150--Hb_003725_010 Hb_172979_010 Hb_172979_010 Hb_012799_150--Hb_172979_010 Hb_012799_150--Hb_104920_010 Hb_012799_150--Hb_003417_030 Hb_003687_120 Hb_003687_120 Hb_012799_150--Hb_003687_120 Hb_000673_010 Hb_000673_010 Hb_008120_040--Hb_000673_010 Hb_001766_070 Hb_001766_070 Hb_008120_040--Hb_001766_070 Hb_000979_140 Hb_000979_140 Hb_008120_040--Hb_000979_140 Hb_000506_110 Hb_000506_110 Hb_008120_040--Hb_000506_110 Hb_002107_100 Hb_002107_100 Hb_104920_010--Hb_002107_100 Hb_000418_050 Hb_000418_050 Hb_104920_010--Hb_000418_050 Hb_001369_030 Hb_001369_030 Hb_104920_010--Hb_001369_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.44321 22.2473 27.222 8.47842 2.2506 2.83317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.64644 6.41935 4.35915 14.536 21.3809

CAGE analysis