Hb_012799_150

Information

Type -
Description -
Location Contig12799: 89689-94487
Sequence    

Annotation

kegg
ID rcu:RCOM_1496470
description hypothetical protein
nr
ID XP_012090277.1
description PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 13 [Jatropha curcas]
swissprot
ID Q9LTJ8
description Methyl-CpG-binding domain-containing protein 13 OS=Arabidopsis thaliana GN=MBD13 PE=2 SV=1
trembl
ID B9R9D4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1496470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08648: 89735-90913 , PASA_asmbl_08649: 91468-94405 , PASA_asmbl_08650: 92437-94486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012799_150 0.0 - - PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 13 [Jatropha curcas]
2 Hb_003725_010 0.0752527104 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
3 Hb_172979_010 0.098669253 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
4 Hb_104920_010 0.0994100731 - - hypothetical protein VITISV_031859 [Vitis vinifera]
5 Hb_003417_030 0.1029554328 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
6 Hb_003687_120 0.103000391 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
7 Hb_025787_010 0.1035531978 - - PREDICTED: histone H1.2-like [Jatropha curcas]
8 Hb_004117_270 0.1053258666 - - -
9 Hb_012633_050 0.1087286774 - - zinc finger protein, putative [Ricinus communis]
10 Hb_003428_090 0.110575381 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
11 Hb_001729_020 0.1108483035 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
12 Hb_024714_070 0.1116457201 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
13 Hb_000160_140 0.112654645 - - PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]
14 Hb_000161_240 0.1140881805 - - PREDICTED: ion channel DMI1-like isoform X1 [Jatropha curcas]
15 Hb_017914_010 0.1141300034 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
16 Hb_000270_700 0.1142244561 - - PREDICTED: protease Do-like 9 [Populus euphratica]
17 Hb_000723_030 0.1194026543 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
18 Hb_000173_190 0.1216297687 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000956_040 0.1217500169 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
20 Hb_002686_150 0.1220567472 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_012799_150 Hb_012799_150 Hb_003725_010 Hb_003725_010 Hb_012799_150--Hb_003725_010 Hb_172979_010 Hb_172979_010 Hb_012799_150--Hb_172979_010 Hb_104920_010 Hb_104920_010 Hb_012799_150--Hb_104920_010 Hb_003417_030 Hb_003417_030 Hb_012799_150--Hb_003417_030 Hb_003687_120 Hb_003687_120 Hb_012799_150--Hb_003687_120 Hb_025787_010 Hb_025787_010 Hb_012799_150--Hb_025787_010 Hb_013358_060 Hb_013358_060 Hb_003725_010--Hb_013358_060 Hb_000270_700 Hb_000270_700 Hb_003725_010--Hb_000270_700 Hb_024714_070 Hb_024714_070 Hb_003725_010--Hb_024714_070 Hb_000015_090 Hb_000015_090 Hb_003725_010--Hb_000015_090 Hb_017914_010 Hb_017914_010 Hb_003725_010--Hb_017914_010 Hb_012633_050 Hb_012633_050 Hb_172979_010--Hb_012633_050 Hb_017193_010 Hb_017193_010 Hb_172979_010--Hb_017193_010 Hb_000076_210 Hb_000076_210 Hb_172979_010--Hb_000076_210 Hb_172979_010--Hb_003687_120 Hb_000120_890 Hb_000120_890 Hb_172979_010--Hb_000120_890 Hb_000160_140 Hb_000160_140 Hb_172979_010--Hb_000160_140 Hb_002107_100 Hb_002107_100 Hb_104920_010--Hb_002107_100 Hb_104920_010--Hb_025787_010 Hb_004117_270 Hb_004117_270 Hb_104920_010--Hb_004117_270 Hb_000418_050 Hb_000418_050 Hb_104920_010--Hb_000418_050 Hb_001369_030 Hb_001369_030 Hb_104920_010--Hb_001369_030 Hb_003417_030--Hb_017914_010 Hb_003417_030--Hb_024714_070 Hb_003417_030--Hb_003725_010 Hb_003428_090 Hb_003428_090 Hb_003417_030--Hb_003428_090 Hb_121089_020 Hb_121089_020 Hb_003417_030--Hb_121089_020 Hb_003470_040 Hb_003470_040 Hb_003687_120--Hb_003470_040 Hb_008725_050 Hb_008725_050 Hb_003687_120--Hb_008725_050 Hb_003687_120--Hb_003428_090 Hb_000723_030 Hb_000723_030 Hb_003687_120--Hb_000723_030 Hb_000890_160 Hb_000890_160 Hb_003687_120--Hb_000890_160 Hb_178968_060 Hb_178968_060 Hb_003687_120--Hb_178968_060 Hb_025787_010--Hb_004117_270 Hb_025787_010--Hb_003417_030 Hb_000161_240 Hb_000161_240 Hb_025787_010--Hb_000161_240 Hb_054865_050 Hb_054865_050 Hb_025787_010--Hb_054865_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.08652 12.6396 16.0488 6.5504 2.30331 2.14165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.8928 5.13815 4.73557 10.5886 9.13957

CAGE analysis