Hb_024714_070

Information

Type -
Description -
Location Contig24714: 34174-49906
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12560g
description POPTRDRAFT_834886; AAA-type ATPase family protein
nr
ID XP_012082733.1
description PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
swissprot
ID Q505J9
description ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=1 SV=1
trembl
ID A0A067K7B0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13911 PE=3 SV=1
Gene Ontology
ID GO:0005524
description aaa-type atpase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25698: 34141-49112 , PASA_asmbl_25700: 39751-41157 , PASA_asmbl_25701: 40044-40192 , PASA_asmbl_25702: 49153-49712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024714_070 0.0 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
2 Hb_003725_010 0.0725188126 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
3 Hb_017914_010 0.0798661305 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
4 Hb_002387_040 0.0869924338 - - protein transporter, putative [Ricinus communis]
5 Hb_003417_030 0.0883311013 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
6 Hb_000015_090 0.08835232 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
7 Hb_013358_060 0.0951030298 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
8 Hb_000015_200 0.0964854555 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
9 Hb_121089_020 0.0986618043 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
10 Hb_000270_700 0.1017770596 - - PREDICTED: protease Do-like 9 [Populus euphratica]
11 Hb_002804_010 0.1019918391 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
12 Hb_000979_140 0.1035883401 - - kinase family protein [Populus trichocarpa]
13 Hb_001729_020 0.1070424517 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
14 Hb_000711_010 0.1075142229 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
15 Hb_002349_030 0.1095721376 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005288_050 0.1115212428 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
17 Hb_012799_150 0.1116457201 - - PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 13 [Jatropha curcas]
18 Hb_000227_320 0.1116473575 - - unnamed protein product [Vitis vinifera]
19 Hb_000094_150 0.1122740399 - - -
20 Hb_004117_270 0.1131470864 - - -

Gene co-expression network

sample Hb_024714_070 Hb_024714_070 Hb_003725_010 Hb_003725_010 Hb_024714_070--Hb_003725_010 Hb_017914_010 Hb_017914_010 Hb_024714_070--Hb_017914_010 Hb_002387_040 Hb_002387_040 Hb_024714_070--Hb_002387_040 Hb_003417_030 Hb_003417_030 Hb_024714_070--Hb_003417_030 Hb_000015_090 Hb_000015_090 Hb_024714_070--Hb_000015_090 Hb_013358_060 Hb_013358_060 Hb_024714_070--Hb_013358_060 Hb_003725_010--Hb_013358_060 Hb_000270_700 Hb_000270_700 Hb_003725_010--Hb_000270_700 Hb_012799_150 Hb_012799_150 Hb_003725_010--Hb_012799_150 Hb_003725_010--Hb_000015_090 Hb_003725_010--Hb_017914_010 Hb_017914_010--Hb_003417_030 Hb_017914_010--Hb_013358_060 Hb_017914_010--Hb_000270_700 Hb_010775_010 Hb_010775_010 Hb_017914_010--Hb_010775_010 Hb_002248_120 Hb_002248_120 Hb_002387_040--Hb_002248_120 Hb_000699_210 Hb_000699_210 Hb_002387_040--Hb_000699_210 Hb_000418_050 Hb_000418_050 Hb_002387_040--Hb_000418_050 Hb_005288_050 Hb_005288_050 Hb_002387_040--Hb_005288_050 Hb_002804_010 Hb_002804_010 Hb_002387_040--Hb_002804_010 Hb_003417_030--Hb_003725_010 Hb_003417_030--Hb_012799_150 Hb_003428_090 Hb_003428_090 Hb_003417_030--Hb_003428_090 Hb_121089_020 Hb_121089_020 Hb_003417_030--Hb_121089_020 Hb_000452_030 Hb_000452_030 Hb_000015_090--Hb_000452_030 Hb_000664_090 Hb_000664_090 Hb_000015_090--Hb_000664_090 Hb_004375_110 Hb_004375_110 Hb_000015_090--Hb_004375_110 Hb_000015_200 Hb_000015_200 Hb_000015_090--Hb_000015_200 Hb_000979_140 Hb_000979_140 Hb_000015_090--Hb_000979_140 Hb_006794_020 Hb_006794_020 Hb_013358_060--Hb_006794_020 Hb_002078_470 Hb_002078_470 Hb_013358_060--Hb_002078_470 Hb_000331_100 Hb_000331_100 Hb_013358_060--Hb_000331_100 Hb_000428_030 Hb_000428_030 Hb_013358_060--Hb_000428_030 Hb_000035_100 Hb_000035_100 Hb_013358_060--Hb_000035_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.19657 33.6541 25.2804 18.6806 4.62825 3.21141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.59572 7.61144 5.87664 19.1398 21.8132

CAGE analysis