Hb_000699_210

Information

Type -
Description -
Location Contig699: 189191-194788
Sequence    

Annotation

kegg
ID pop:POPTR_0013s04060g
description POPTRDRAFT_571068; hypothetical protein
nr
ID XP_012089296.1
description PREDICTED: myosin-binding protein 1 [Jatropha curcas]
swissprot
ID F4HXQ7
description Myosin-binding protein 1 OS=Arabidopsis thaliana GN=MYOB1 PE=1 SV=1
trembl
ID A0A067JLJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23521 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54693: 189303-190959 , PASA_asmbl_54695: 193193-194738
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_210 0.0 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
2 Hb_001488_040 0.0763877114 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
3 Hb_009486_160 0.0806923001 - - PREDICTED: metacaspase-1 [Jatropha curcas]
4 Hb_002387_040 0.0824705143 - - protein transporter, putative [Ricinus communis]
5 Hb_000638_280 0.0837712696 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
6 Hb_002897_050 0.0846545299 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
7 Hb_000796_120 0.0865403526 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
8 Hb_004319_050 0.0933648586 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
9 Hb_000261_280 0.0940934867 - - BnaA10g23810D [Brassica napus]
10 Hb_002900_120 0.0943930708 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
11 Hb_000156_090 0.0945497859 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
12 Hb_011249_060 0.0954064188 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
13 Hb_002812_010 0.0957359511 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
14 Hb_002965_050 0.0958733983 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
15 Hb_001257_100 0.0984212713 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
16 Hb_010287_020 0.0994048626 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
17 Hb_013358_060 0.099765994 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
18 Hb_004526_010 0.1008298417 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
19 Hb_004774_020 0.1012373689 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
20 Hb_002600_080 0.1016889266 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000699_210 Hb_000699_210 Hb_001488_040 Hb_001488_040 Hb_000699_210--Hb_001488_040 Hb_009486_160 Hb_009486_160 Hb_000699_210--Hb_009486_160 Hb_002387_040 Hb_002387_040 Hb_000699_210--Hb_002387_040 Hb_000638_280 Hb_000638_280 Hb_000699_210--Hb_000638_280 Hb_002897_050 Hb_002897_050 Hb_000699_210--Hb_002897_050 Hb_000796_120 Hb_000796_120 Hb_000699_210--Hb_000796_120 Hb_001862_110 Hb_001862_110 Hb_001488_040--Hb_001862_110 Hb_001488_040--Hb_009486_160 Hb_001427_150 Hb_001427_150 Hb_001488_040--Hb_001427_150 Hb_011249_060 Hb_011249_060 Hb_001488_040--Hb_011249_060 Hb_005765_040 Hb_005765_040 Hb_001488_040--Hb_005765_040 Hb_009486_160--Hb_011249_060 Hb_002812_010 Hb_002812_010 Hb_009486_160--Hb_002812_010 Hb_009486_160--Hb_001862_110 Hb_004319_070 Hb_004319_070 Hb_009486_160--Hb_004319_070 Hb_000363_120 Hb_000363_120 Hb_009486_160--Hb_000363_120 Hb_004899_040 Hb_004899_040 Hb_009486_160--Hb_004899_040 Hb_002248_120 Hb_002248_120 Hb_002387_040--Hb_002248_120 Hb_024714_070 Hb_024714_070 Hb_002387_040--Hb_024714_070 Hb_000418_050 Hb_000418_050 Hb_002387_040--Hb_000418_050 Hb_005288_050 Hb_005288_050 Hb_002387_040--Hb_005288_050 Hb_002804_010 Hb_002804_010 Hb_002387_040--Hb_002804_010 Hb_000045_260 Hb_000045_260 Hb_000638_280--Hb_000045_260 Hb_000638_280--Hb_002897_050 Hb_000156_090 Hb_000156_090 Hb_000638_280--Hb_000156_090 Hb_011631_010 Hb_011631_010 Hb_000638_280--Hb_011631_010 Hb_000638_280--Hb_000796_120 Hb_000866_210 Hb_000866_210 Hb_002897_050--Hb_000866_210 Hb_002897_050--Hb_011631_010 Hb_002107_060 Hb_002107_060 Hb_002897_050--Hb_002107_060 Hb_000084_240 Hb_000084_240 Hb_002897_050--Hb_000084_240 Hb_002897_050--Hb_000045_260 Hb_004319_050 Hb_004319_050 Hb_000796_120--Hb_004319_050 Hb_004526_010 Hb_004526_010 Hb_000796_120--Hb_004526_010 Hb_002107_100 Hb_002107_100 Hb_000796_120--Hb_002107_100 Hb_000796_120--Hb_000418_050 Hb_000261_280 Hb_000261_280 Hb_000796_120--Hb_000261_280 Hb_009178_010 Hb_009178_010 Hb_000796_120--Hb_009178_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.14439 10.7022 6.19752 4.3784 2.12716 1.63034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11787 2.81609 1.63489 3.78814 3.95526

CAGE analysis