Hb_000261_280

Information

Type -
Description -
Location Contig261: 249507-251702
Sequence    

Annotation

kegg
ID rcu:RCOM_1018980
description elongation factor 1-alpha, putative (EC:2.7.7.4)
nr
ID CDX70032.1
description BnaA10g23810D [Brassica napus]
swissprot
ID Q18905
description GTP-binding protein cgp-1 OS=Caenorhabditis elegans GN=cgp-1 PE=2 SV=2
trembl
ID M4DUQ8
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra020251 PE=4 SV=1
Gene Ontology
ID GO:0003746
description gtp binding elongation factor tu family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27280: 220178-256474 , PASA_asmbl_27282: 249610-252114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_280 0.0 - - BnaA10g23810D [Brassica napus]
2 Hb_000803_180 0.0717180965 - - hexokinase [Manihot esculenta]
3 Hb_000418_050 0.0770274344 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
4 Hb_003777_130 0.081162832 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
5 Hb_000796_120 0.0825027009 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
6 Hb_033152_090 0.0831266856 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
7 Hb_004319_050 0.0846890867 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
8 Hb_003018_030 0.0860355395 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
9 Hb_007416_260 0.0879517256 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
10 Hb_003849_220 0.0892943631 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
11 Hb_001009_120 0.0895994972 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
12 Hb_000640_190 0.0897230779 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
13 Hb_005288_140 0.090944001 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
14 Hb_000258_420 0.0934717911 - - sucrose transporter 2A [Hevea brasiliensis]
15 Hb_000699_210 0.0940934867 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
16 Hb_000034_110 0.0956423567 - - sentrin/sumo-specific protease, putative [Ricinus communis]
17 Hb_000270_700 0.0964474388 - - PREDICTED: protease Do-like 9 [Populus euphratica]
18 Hb_000421_110 0.0971070439 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
19 Hb_002965_050 0.0994894479 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
20 Hb_003428_090 0.1016145498 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]

Gene co-expression network

sample Hb_000261_280 Hb_000261_280 Hb_000803_180 Hb_000803_180 Hb_000261_280--Hb_000803_180 Hb_000418_050 Hb_000418_050 Hb_000261_280--Hb_000418_050 Hb_003777_130 Hb_003777_130 Hb_000261_280--Hb_003777_130 Hb_000796_120 Hb_000796_120 Hb_000261_280--Hb_000796_120 Hb_033152_090 Hb_033152_090 Hb_000261_280--Hb_033152_090 Hb_004319_050 Hb_004319_050 Hb_000261_280--Hb_004319_050 Hb_152910_010 Hb_152910_010 Hb_000803_180--Hb_152910_010 Hb_002311_140 Hb_002311_140 Hb_000803_180--Hb_002311_140 Hb_172257_010 Hb_172257_010 Hb_000803_180--Hb_172257_010 Hb_000803_180--Hb_004319_050 Hb_003849_220 Hb_003849_220 Hb_000803_180--Hb_003849_220 Hb_000270_700 Hb_000270_700 Hb_000418_050--Hb_000270_700 Hb_001133_090 Hb_001133_090 Hb_000418_050--Hb_001133_090 Hb_000421_110 Hb_000421_110 Hb_000418_050--Hb_000421_110 Hb_005885_030 Hb_005885_030 Hb_000418_050--Hb_005885_030 Hb_002107_100 Hb_002107_100 Hb_000418_050--Hb_002107_100 Hb_000258_420 Hb_000258_420 Hb_003777_130--Hb_000258_420 Hb_000815_310 Hb_000815_310 Hb_003777_130--Hb_000815_310 Hb_004375_110 Hb_004375_110 Hb_003777_130--Hb_004375_110 Hb_003777_130--Hb_033152_090 Hb_000671_030 Hb_000671_030 Hb_003777_130--Hb_000671_030 Hb_000640_190 Hb_000640_190 Hb_003777_130--Hb_000640_190 Hb_000796_120--Hb_004319_050 Hb_004526_010 Hb_004526_010 Hb_000796_120--Hb_004526_010 Hb_000796_120--Hb_002107_100 Hb_000796_120--Hb_000418_050 Hb_009178_010 Hb_009178_010 Hb_000796_120--Hb_009178_010 Hb_033152_090--Hb_000640_190 Hb_033152_090--Hb_000258_420 Hb_001009_120 Hb_001009_120 Hb_033152_090--Hb_001009_120 Hb_000956_040 Hb_000956_040 Hb_033152_090--Hb_000956_040 Hb_033152_090--Hb_000815_310 Hb_005288_140 Hb_005288_140 Hb_004319_050--Hb_005288_140 Hb_004319_050--Hb_004526_010 Hb_002903_140 Hb_002903_140 Hb_004319_050--Hb_002903_140 Hb_004319_050--Hb_152910_010 Hb_011249_060 Hb_011249_060 Hb_004319_050--Hb_011249_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.8826 298.796 267.45 197.611 97.8609 56.6878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.2875 80.8922 39.1214 107.225 126.473

CAGE analysis