Hb_002311_140

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig2311: 63228-66868
Sequence    

Annotation

kegg
ID rcu:RCOM_0999460
description GATA transcription factor, putative
nr
ID XP_012084018.1
description PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
swissprot
ID Q8LG10
description GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2
trembl
ID A0A067K6I5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18955 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24303: 58476-62960 , PASA_asmbl_24304: 65725-66821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_140 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
2 Hb_085364_010 0.0886128737 - - PREDICTED: nicalin-1-like [Populus euphratica]
3 Hb_000803_180 0.0936222438 - - hexokinase [Manihot esculenta]
4 Hb_000671_060 0.1032382662 - - protein binding protein, putative [Ricinus communis]
5 Hb_000261_280 0.1051061083 - - BnaA10g23810D [Brassica napus]
6 Hb_003078_030 0.11540357 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
7 Hb_000163_230 0.1243892429 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
8 Hb_000925_030 0.1254861806 - - ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_004526_010 0.1258174366 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
10 Hb_152910_010 0.1282412392 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
11 Hb_003849_220 0.1287037239 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
12 Hb_001009_090 0.1287158894 - - CDK protein [Hevea brasiliensis]
13 Hb_004319_050 0.1310688986 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
14 Hb_001369_780 0.1311791452 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000866_450 0.1332618112 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_055488_020 0.1333481896 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
17 Hb_001245_050 0.13529541 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
18 Hb_030545_030 0.1363271901 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
19 Hb_002107_060 0.1369352081 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
20 Hb_000186_200 0.1374257424 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]

Gene co-expression network

sample Hb_002311_140 Hb_002311_140 Hb_085364_010 Hb_085364_010 Hb_002311_140--Hb_085364_010 Hb_000803_180 Hb_000803_180 Hb_002311_140--Hb_000803_180 Hb_000671_060 Hb_000671_060 Hb_002311_140--Hb_000671_060 Hb_000261_280 Hb_000261_280 Hb_002311_140--Hb_000261_280 Hb_003078_030 Hb_003078_030 Hb_002311_140--Hb_003078_030 Hb_000163_230 Hb_000163_230 Hb_002311_140--Hb_000163_230 Hb_001484_100 Hb_001484_100 Hb_085364_010--Hb_001484_100 Hb_030545_030 Hb_030545_030 Hb_085364_010--Hb_030545_030 Hb_085364_010--Hb_003078_030 Hb_004526_010 Hb_004526_010 Hb_085364_010--Hb_004526_010 Hb_002812_010 Hb_002812_010 Hb_085364_010--Hb_002812_010 Hb_000803_180--Hb_000261_280 Hb_152910_010 Hb_152910_010 Hb_000803_180--Hb_152910_010 Hb_172257_010 Hb_172257_010 Hb_000803_180--Hb_172257_010 Hb_004319_050 Hb_004319_050 Hb_000803_180--Hb_004319_050 Hb_003849_220 Hb_003849_220 Hb_000803_180--Hb_003849_220 Hb_003090_150 Hb_003090_150 Hb_000671_060--Hb_003090_150 Hb_000671_060--Hb_000163_230 Hb_012305_140 Hb_012305_140 Hb_000671_060--Hb_012305_140 Hb_001196_080 Hb_001196_080 Hb_000671_060--Hb_001196_080 Hb_000671_060--Hb_000261_280 Hb_000418_050 Hb_000418_050 Hb_000261_280--Hb_000418_050 Hb_003777_130 Hb_003777_130 Hb_000261_280--Hb_003777_130 Hb_000796_120 Hb_000796_120 Hb_000261_280--Hb_000796_120 Hb_033152_090 Hb_033152_090 Hb_000261_280--Hb_033152_090 Hb_000261_280--Hb_004319_050 Hb_000056_300 Hb_000056_300 Hb_003078_030--Hb_000056_300 Hb_000186_200 Hb_000186_200 Hb_003078_030--Hb_000186_200 Hb_003078_030--Hb_000163_230 Hb_001009_090 Hb_001009_090 Hb_003078_030--Hb_001009_090 Hb_005000_300 Hb_005000_300 Hb_003078_030--Hb_005000_300 Hb_000836_370 Hb_000836_370 Hb_003078_030--Hb_000836_370 Hb_000454_140 Hb_000454_140 Hb_000163_230--Hb_000454_140 Hb_000163_230--Hb_001009_090 Hb_000045_260 Hb_000045_260 Hb_000163_230--Hb_000045_260 Hb_000163_230--Hb_000186_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.4021 11.5319 7.52823 5.64035 4.45477 1.95099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58699 2.68876 0.714454 2.56461 2.18576

CAGE analysis