Hb_012305_140

Information

Type transcription factor
Description TF Family: CAMTA
Location Contig12305: 101528-115639
Sequence    

Annotation

kegg
ID rcu:RCOM_0999870
description calmodulin-binding transcription activator (camta), plants, putative
nr
ID XP_012084038.1
description PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
swissprot
ID O23463
description Calmodulin-binding transcription activator 5 OS=Arabidopsis thaliana GN=CMTA5 PE=2 SV=2
trembl
ID A0A067JV90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18971 PE=4 SV=1
Gene Ontology
ID GO:0005634
description calmodulin-binding transcription activator 5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07020: 101541-115865 , PASA_asmbl_07021: 105256-109726 , PASA_asmbl_07022: 104838-109726
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012305_140 0.0 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
2 Hb_005694_130 0.0749348492 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
3 Hb_003992_180 0.0770101111 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
4 Hb_000454_140 0.0875557533 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
5 Hb_010368_080 0.0895348955 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
6 Hb_007849_050 0.0916878017 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
7 Hb_002609_190 0.0992848688 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
8 Hb_004526_010 0.099572021 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
9 Hb_001009_120 0.1007952736 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
10 Hb_000421_110 0.1027355352 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
11 Hb_001133_090 0.1029364591 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
12 Hb_003001_070 0.1062096127 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
13 Hb_003895_020 0.1081072057 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
14 Hb_000609_110 0.108821706 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
15 Hb_027380_210 0.110099902 - - PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
16 Hb_000671_060 0.1102017886 - - protein binding protein, putative [Ricinus communis]
17 Hb_000796_120 0.1103019193 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
18 Hb_000163_230 0.1107338812 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
19 Hb_001369_030 0.1110385689 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
20 Hb_152910_010 0.1113606812 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]

Gene co-expression network

sample Hb_012305_140 Hb_012305_140 Hb_005694_130 Hb_005694_130 Hb_012305_140--Hb_005694_130 Hb_003992_180 Hb_003992_180 Hb_012305_140--Hb_003992_180 Hb_000454_140 Hb_000454_140 Hb_012305_140--Hb_000454_140 Hb_010368_080 Hb_010368_080 Hb_012305_140--Hb_010368_080 Hb_007849_050 Hb_007849_050 Hb_012305_140--Hb_007849_050 Hb_002609_190 Hb_002609_190 Hb_012305_140--Hb_002609_190 Hb_003001_070 Hb_003001_070 Hb_005694_130--Hb_003001_070 Hb_000609_110 Hb_000609_110 Hb_005694_130--Hb_000609_110 Hb_005694_130--Hb_003992_180 Hb_005694_130--Hb_000454_140 Hb_000805_200 Hb_000805_200 Hb_005694_130--Hb_000805_200 Hb_030545_030 Hb_030545_030 Hb_003992_180--Hb_030545_030 Hb_006615_030 Hb_006615_030 Hb_003992_180--Hb_006615_030 Hb_004526_010 Hb_004526_010 Hb_003992_180--Hb_004526_010 Hb_001558_060 Hb_001558_060 Hb_003992_180--Hb_001558_060 Hb_000163_230 Hb_000163_230 Hb_000454_140--Hb_000163_230 Hb_000454_140--Hb_007849_050 Hb_000045_260 Hb_000045_260 Hb_000454_140--Hb_000045_260 Hb_005499_010 Hb_005499_010 Hb_000454_140--Hb_005499_010 Hb_001369_030 Hb_001369_030 Hb_010368_080--Hb_001369_030 Hb_004267_060 Hb_004267_060 Hb_010368_080--Hb_004267_060 Hb_010368_080--Hb_004526_010 Hb_000796_120 Hb_000796_120 Hb_010368_080--Hb_000796_120 Hb_004837_220 Hb_004837_220 Hb_010368_080--Hb_004837_220 Hb_007849_050--Hb_003001_070 Hb_007849_050--Hb_005694_130 Hb_007849_050--Hb_000163_230 Hb_004324_060 Hb_004324_060 Hb_007849_050--Hb_004324_060 Hb_001133_090 Hb_001133_090 Hb_002609_190--Hb_001133_090 Hb_004800_130 Hb_004800_130 Hb_002609_190--Hb_004800_130 Hb_007031_040 Hb_007031_040 Hb_002609_190--Hb_007031_040 Hb_002259_110 Hb_002259_110 Hb_002609_190--Hb_002259_110 Hb_001205_180 Hb_001205_180 Hb_002609_190--Hb_001205_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.8824 130.507 120.4 42.9568 38.9498 36.2448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0113 10.7285 18.5735 36.2627 44.9382

CAGE analysis