Hb_002609_190

Information

Type -
Description -
Location Contig2609: 140273-142850
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25720g
description POPTRDRAFT_797640; hypothetical protein
nr
ID XP_012067872.1
description PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LDN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08489 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tetratricopeptide repeat-like superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27202: 141628-141923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_190 0.0 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
2 Hb_001133_090 0.0933871743 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
3 Hb_012305_140 0.0992848688 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
4 Hb_004800_130 0.1137499689 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
5 Hb_007031_040 0.1150584822 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
6 Hb_002259_110 0.1171359929 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
7 Hb_001205_180 0.1179642141 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
8 Hb_001488_210 0.1191639434 - - PREDICTED: protein RIK [Jatropha curcas]
9 Hb_000418_050 0.1200569474 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
10 Hb_000421_110 0.12013506 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
11 Hb_002553_010 0.121560618 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
12 Hb_010775_010 0.1241179159 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
13 Hb_007849_050 0.1244157529 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
14 Hb_004324_060 0.1248780762 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
15 Hb_152910_010 0.1256746405 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
16 Hb_001776_200 0.1262523391 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
17 Hb_000454_140 0.1274044875 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
18 Hb_000671_060 0.129580583 - - protein binding protein, putative [Ricinus communis]
19 Hb_005885_030 0.129934201 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
20 Hb_000796_120 0.1304567275 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_002609_190 Hb_002609_190 Hb_001133_090 Hb_001133_090 Hb_002609_190--Hb_001133_090 Hb_012305_140 Hb_012305_140 Hb_002609_190--Hb_012305_140 Hb_004800_130 Hb_004800_130 Hb_002609_190--Hb_004800_130 Hb_007031_040 Hb_007031_040 Hb_002609_190--Hb_007031_040 Hb_002259_110 Hb_002259_110 Hb_002609_190--Hb_002259_110 Hb_001205_180 Hb_001205_180 Hb_002609_190--Hb_001205_180 Hb_000421_110 Hb_000421_110 Hb_001133_090--Hb_000421_110 Hb_000418_050 Hb_000418_050 Hb_001133_090--Hb_000418_050 Hb_001133_090--Hb_007031_040 Hb_005885_030 Hb_005885_030 Hb_001133_090--Hb_005885_030 Hb_000270_700 Hb_000270_700 Hb_001133_090--Hb_000270_700 Hb_010775_010 Hb_010775_010 Hb_001133_090--Hb_010775_010 Hb_005694_130 Hb_005694_130 Hb_012305_140--Hb_005694_130 Hb_003992_180 Hb_003992_180 Hb_012305_140--Hb_003992_180 Hb_000454_140 Hb_000454_140 Hb_012305_140--Hb_000454_140 Hb_010368_080 Hb_010368_080 Hb_012305_140--Hb_010368_080 Hb_007849_050 Hb_007849_050 Hb_012305_140--Hb_007849_050 Hb_004800_130--Hb_001205_180 Hb_004800_130--Hb_001133_090 Hb_002553_010 Hb_002553_010 Hb_004800_130--Hb_002553_010 Hb_004800_130--Hb_010775_010 Hb_006794_020 Hb_006794_020 Hb_004800_130--Hb_006794_020 Hb_159295_010 Hb_159295_010 Hb_004800_130--Hb_159295_010 Hb_007031_040--Hb_000421_110 Hb_001911_010 Hb_001911_010 Hb_007031_040--Hb_001911_010 Hb_000270_110 Hb_000270_110 Hb_007031_040--Hb_000270_110 Hb_007031_040--Hb_159295_010 Hb_001410_130 Hb_001410_130 Hb_007031_040--Hb_001410_130 Hb_002259_110--Hb_002553_010 Hb_152910_010 Hb_152910_010 Hb_002259_110--Hb_152910_010 Hb_002259_110--Hb_001133_090 Hb_075203_010 Hb_075203_010 Hb_002259_110--Hb_075203_010 Hb_000134_250 Hb_000134_250 Hb_002259_110--Hb_000134_250 Hb_001373_160 Hb_001373_160 Hb_002259_110--Hb_001373_160 Hb_001205_180--Hb_001133_090 Hb_001205_180--Hb_002553_010 Hb_001205_180--Hb_010775_010 Hb_001488_210 Hb_001488_210 Hb_001205_180--Hb_001488_210 Hb_083078_010 Hb_083078_010 Hb_001205_180--Hb_083078_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.84443 14.28 12.3097 5.74433 4.44451 1.95325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36861 0.739361 0.885952 4.93259 4.49513

CAGE analysis