Hb_001373_160

Information

Type -
Description -
Location Contig1373: 120118-123927
Sequence    

Annotation

kegg
ID pop:POPTR_0001s21550g
description POPTRDRAFT_1067453; hypothetical protein
nr
ID KDP43620.1
description hypothetical protein JCGZ_16907 [Jatropha curcas]
swissprot
ID Q9H307
description Pinin OS=Homo sapiens GN=PNN PE=1 SV=4
trembl
ID A0A067LGC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16907 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10309: 120569-120708 , PASA_asmbl_10310: 120709-121484 , PASA_asmbl_10311: 122778-123365
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001373_160 0.0 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
2 Hb_033554_020 0.0807926798 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
3 Hb_000134_250 0.0863540011 - - protein with unknown function [Ricinus communis]
4 Hb_012940_040 0.0938622633 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
5 Hb_004724_370 0.0980316081 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
6 Hb_001171_030 0.0981040955 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
7 Hb_010287_030 0.0998267755 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001723_140 0.1021815833 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
9 Hb_002553_010 0.1040951639 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
10 Hb_015183_100 0.1058431098 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
11 Hb_000994_020 0.1063556893 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
12 Hb_000184_150 0.1070623571 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
13 Hb_002259_110 0.1082625027 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
14 Hb_003142_040 0.1091085049 - - Sf3a3 [Gossypium arboreum]
15 Hb_000260_770 0.1110148554 - - er lumen protein retaining receptor, putative [Ricinus communis]
16 Hb_002968_070 0.1127585486 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
17 Hb_000302_170 0.113979121 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
18 Hb_007982_050 0.1144466368 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Jatropha curcas]
19 Hb_088144_020 0.1153102677 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
20 Hb_001047_200 0.1155414566 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]

Gene co-expression network

sample Hb_001373_160 Hb_001373_160 Hb_033554_020 Hb_033554_020 Hb_001373_160--Hb_033554_020 Hb_000134_250 Hb_000134_250 Hb_001373_160--Hb_000134_250 Hb_012940_040 Hb_012940_040 Hb_001373_160--Hb_012940_040 Hb_004724_370 Hb_004724_370 Hb_001373_160--Hb_004724_370 Hb_001171_030 Hb_001171_030 Hb_001373_160--Hb_001171_030 Hb_010287_030 Hb_010287_030 Hb_001373_160--Hb_010287_030 Hb_000243_130 Hb_000243_130 Hb_033554_020--Hb_000243_130 Hb_006618_090 Hb_006618_090 Hb_033554_020--Hb_006618_090 Hb_000102_050 Hb_000102_050 Hb_033554_020--Hb_000102_050 Hb_000994_020 Hb_000994_020 Hb_033554_020--Hb_000994_020 Hb_006501_010 Hb_006501_010 Hb_033554_020--Hb_006501_010 Hb_000134_250--Hb_000994_020 Hb_000260_770 Hb_000260_770 Hb_000134_250--Hb_000260_770 Hb_009659_030 Hb_009659_030 Hb_000134_250--Hb_009659_030 Hb_000134_250--Hb_006501_010 Hb_000134_250--Hb_010287_030 Hb_002968_070 Hb_002968_070 Hb_012940_040--Hb_002968_070 Hb_002016_090 Hb_002016_090 Hb_012940_040--Hb_002016_090 Hb_012940_040--Hb_000260_770 Hb_012940_040--Hb_001171_030 Hb_015183_100 Hb_015183_100 Hb_012940_040--Hb_015183_100 Hb_000174_150 Hb_000174_150 Hb_012940_040--Hb_000174_150 Hb_001674_040 Hb_001674_040 Hb_004724_370--Hb_001674_040 Hb_001723_140 Hb_001723_140 Hb_004724_370--Hb_001723_140 Hb_004724_370--Hb_010287_030 Hb_001584_350 Hb_001584_350 Hb_004724_370--Hb_001584_350 Hb_002811_040 Hb_002811_040 Hb_004724_370--Hb_002811_040 Hb_004724_370--Hb_000102_050 Hb_003142_040 Hb_003142_040 Hb_001171_030--Hb_003142_040 Hb_001171_030--Hb_002968_070 Hb_001171_030--Hb_001723_140 Hb_000189_630 Hb_000189_630 Hb_001171_030--Hb_000189_630 Hb_000977_300 Hb_000977_300 Hb_001171_030--Hb_000977_300 Hb_000529_060 Hb_000529_060 Hb_001171_030--Hb_000529_060 Hb_000302_170 Hb_000302_170 Hb_010287_030--Hb_000302_170 Hb_008165_030 Hb_008165_030 Hb_010287_030--Hb_008165_030 Hb_010287_030--Hb_001674_040 Hb_030545_030 Hb_030545_030 Hb_010287_030--Hb_030545_030 Hb_006573_160 Hb_006573_160 Hb_010287_030--Hb_006573_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4436 18.7201 20.6515 9.69504 12.5528 9.9531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.69016 2.72599 2.33258 19.7001 9.64092

CAGE analysis