Hb_000260_770

Information

Type -
Description -
Location Contig260: 578926-581478
Sequence    

Annotation

kegg
ID rcu:RCOM_1324620
description er lumen protein retaining receptor, putative
nr
ID XP_002520019.1
description er lumen protein retaining receptor, putative [Ricinus communis]
swissprot
ID Q8VWI1
description ER lumen protein-retaining receptor B OS=Arabidopsis thaliana GN=ERD2B PE=1 SV=1
trembl
ID B9S200
description ER lumen protein-retaining receptor OS=Ricinus communis GN=RCOM_1324620 PE=3 SV=1
Gene Ontology
ID GO:0005789
description er lumen protein-retaining receptor-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27067: 578946-581552 , PASA_asmbl_27068: 578959-581374
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_770 0.0 - - er lumen protein retaining receptor, putative [Ricinus communis]
2 Hb_000994_020 0.0704313312 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
3 Hb_012940_040 0.071539885 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
4 Hb_000139_320 0.0791417674 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
5 Hb_003470_040 0.0798453651 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
6 Hb_004319_050 0.0821638476 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
7 Hb_004724_370 0.0828476245 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
8 Hb_152910_010 0.0835347656 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
9 Hb_000174_150 0.0836544013 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
10 Hb_000529_060 0.0855295696 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
11 Hb_009449_060 0.08670003 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
12 Hb_003711_010 0.0879328062 - - isopropylmalate synthase, putative [Ricinus communis]
13 Hb_000977_300 0.0890448243 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
14 Hb_000890_160 0.0897106328 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
15 Hb_000102_050 0.0902130258 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
16 Hb_000134_250 0.0906258683 - - protein with unknown function [Ricinus communis]
17 Hb_000046_600 0.0911452324 - - PREDICTED: cullin-1-like [Jatropha curcas]
18 Hb_004267_060 0.0914643877 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_000340_030 0.0917044711 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
20 Hb_000207_200 0.0920595091 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000260_770 Hb_000260_770 Hb_000994_020 Hb_000994_020 Hb_000260_770--Hb_000994_020 Hb_012940_040 Hb_012940_040 Hb_000260_770--Hb_012940_040 Hb_000139_320 Hb_000139_320 Hb_000260_770--Hb_000139_320 Hb_003470_040 Hb_003470_040 Hb_000260_770--Hb_003470_040 Hb_004319_050 Hb_004319_050 Hb_000260_770--Hb_004319_050 Hb_004724_370 Hb_004724_370 Hb_000260_770--Hb_004724_370 Hb_015026_100 Hb_015026_100 Hb_000994_020--Hb_015026_100 Hb_000046_600 Hb_000046_600 Hb_000994_020--Hb_000046_600 Hb_006501_010 Hb_006501_010 Hb_000994_020--Hb_006501_010 Hb_000302_170 Hb_000302_170 Hb_000994_020--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_000994_020--Hb_000300_550 Hb_002968_070 Hb_002968_070 Hb_012940_040--Hb_002968_070 Hb_002016_090 Hb_002016_090 Hb_012940_040--Hb_002016_090 Hb_001171_030 Hb_001171_030 Hb_012940_040--Hb_001171_030 Hb_015183_100 Hb_015183_100 Hb_012940_040--Hb_015183_100 Hb_000174_150 Hb_000174_150 Hb_012940_040--Hb_000174_150 Hb_000340_030 Hb_000340_030 Hb_000139_320--Hb_000340_030 Hb_001723_010 Hb_001723_010 Hb_000139_320--Hb_001723_010 Hb_003711_010 Hb_003711_010 Hb_000139_320--Hb_003711_010 Hb_026980_020 Hb_026980_020 Hb_000139_320--Hb_026980_020 Hb_102438_030 Hb_102438_030 Hb_000139_320--Hb_102438_030 Hb_000139_320--Hb_000174_150 Hb_029695_080 Hb_029695_080 Hb_003470_040--Hb_029695_080 Hb_000207_200 Hb_000207_200 Hb_003470_040--Hb_000207_200 Hb_033642_120 Hb_033642_120 Hb_003470_040--Hb_033642_120 Hb_003687_120 Hb_003687_120 Hb_003470_040--Hb_003687_120 Hb_000089_210 Hb_000089_210 Hb_003470_040--Hb_000089_210 Hb_002110_160 Hb_002110_160 Hb_003470_040--Hb_002110_160 Hb_005288_140 Hb_005288_140 Hb_004319_050--Hb_005288_140 Hb_004526_010 Hb_004526_010 Hb_004319_050--Hb_004526_010 Hb_000796_120 Hb_000796_120 Hb_004319_050--Hb_000796_120 Hb_002903_140 Hb_002903_140 Hb_004319_050--Hb_002903_140 Hb_152910_010 Hb_152910_010 Hb_004319_050--Hb_152910_010 Hb_011249_060 Hb_011249_060 Hb_004319_050--Hb_011249_060 Hb_001674_040 Hb_001674_040 Hb_004724_370--Hb_001674_040 Hb_001723_140 Hb_001723_140 Hb_004724_370--Hb_001723_140 Hb_010287_030 Hb_010287_030 Hb_004724_370--Hb_010287_030 Hb_001584_350 Hb_001584_350 Hb_004724_370--Hb_001584_350 Hb_002811_040 Hb_002811_040 Hb_004724_370--Hb_002811_040 Hb_000102_050 Hb_000102_050 Hb_004724_370--Hb_000102_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8856 30.4027 39.3334 20.3962 14.5592 13.4993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.28376 8.46265 8.22786 24.8233 13.3042

CAGE analysis