Hb_004724_370

Information

Type -
Description -
Location Contig4724: 229920-234596
Sequence    

Annotation

kegg
ID pop:POPTR_0009s16180g
description POPTRDRAFT_767046; hypothetical protein
nr
ID XP_012077850.1
description PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
swissprot
ID Q9SJF3
description mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=1 SV=2
trembl
ID A0A067KMT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13561 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44381: 223533-229193 , PASA_asmbl_44382: 223622-229193 , PASA_asmbl_44386: 232957-234301 , PASA_asmbl_44387: 230449-231831 , PASA_asmbl_44388: 230050-234258 , PASA_asmbl_44389: 234416-235442
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_370 0.0 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
2 Hb_001674_040 0.0607999772 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
3 Hb_001723_140 0.0681333845 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
4 Hb_010287_030 0.0682227206 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001584_350 0.0698427737 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
6 Hb_002811_040 0.0737083238 - - 5'->3' exoribonuclease, putative [Ricinus communis]
7 Hb_000102_050 0.0748531079 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
8 Hb_000529_060 0.0750275582 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
9 Hb_012940_040 0.0771058705 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
10 Hb_008165_030 0.0788658411 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
11 Hb_001171_030 0.0799612741 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
12 Hb_128548_010 0.0806902833 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000260_770 0.0828476245 - - er lumen protein retaining receptor, putative [Ricinus communis]
14 Hb_000340_030 0.0834930388 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
15 Hb_002968_070 0.0848589997 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
16 Hb_013358_070 0.0862254227 - - protein with unknown function [Ricinus communis]
17 Hb_011920_020 0.0867016097 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
18 Hb_010661_020 0.0894147116 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
19 Hb_003142_040 0.0895757527 - - Sf3a3 [Gossypium arboreum]
20 Hb_002016_090 0.0915715861 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]

Gene co-expression network

sample Hb_004724_370 Hb_004724_370 Hb_001674_040 Hb_001674_040 Hb_004724_370--Hb_001674_040 Hb_001723_140 Hb_001723_140 Hb_004724_370--Hb_001723_140 Hb_010287_030 Hb_010287_030 Hb_004724_370--Hb_010287_030 Hb_001584_350 Hb_001584_350 Hb_004724_370--Hb_001584_350 Hb_002811_040 Hb_002811_040 Hb_004724_370--Hb_002811_040 Hb_000102_050 Hb_000102_050 Hb_004724_370--Hb_000102_050 Hb_008165_030 Hb_008165_030 Hb_001674_040--Hb_008165_030 Hb_001674_040--Hb_001723_140 Hb_011920_020 Hb_011920_020 Hb_001674_040--Hb_011920_020 Hb_001674_040--Hb_001584_350 Hb_010661_020 Hb_010661_020 Hb_001674_040--Hb_010661_020 Hb_001171_030 Hb_001171_030 Hb_001723_140--Hb_001171_030 Hb_013358_070 Hb_013358_070 Hb_001723_140--Hb_013358_070 Hb_001723_140--Hb_001584_350 Hb_003142_040 Hb_003142_040 Hb_001723_140--Hb_003142_040 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_000529_060 Hb_000529_060 Hb_001723_140--Hb_000529_060 Hb_000302_170 Hb_000302_170 Hb_010287_030--Hb_000302_170 Hb_010287_030--Hb_008165_030 Hb_010287_030--Hb_001674_040 Hb_030545_030 Hb_030545_030 Hb_010287_030--Hb_030545_030 Hb_006573_160 Hb_006573_160 Hb_010287_030--Hb_006573_160 Hb_001584_350--Hb_000529_060 Hb_001584_350--Hb_001171_030 Hb_000174_150 Hb_000174_150 Hb_001584_350--Hb_000174_150 Hb_128548_010 Hb_128548_010 Hb_001584_350--Hb_128548_010 Hb_000977_300 Hb_000977_300 Hb_001584_350--Hb_000977_300 Hb_000003_400 Hb_000003_400 Hb_002811_040--Hb_000003_400 Hb_002811_040--Hb_000529_060 Hb_000445_060 Hb_000445_060 Hb_002811_040--Hb_000445_060 Hb_008387_010 Hb_008387_010 Hb_002811_040--Hb_008387_010 Hb_023226_070 Hb_023226_070 Hb_002811_040--Hb_023226_070 Hb_102438_030 Hb_102438_030 Hb_000102_050--Hb_102438_030 Hb_004032_230 Hb_004032_230 Hb_000102_050--Hb_004032_230 Hb_000340_030 Hb_000340_030 Hb_000102_050--Hb_000340_030 Hb_000102_050--Hb_000529_060 Hb_005333_140 Hb_005333_140 Hb_000102_050--Hb_005333_140 Hb_000102_050--Hb_000302_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.18395 6.29447 6.72265 3.24273 3.08294 3.89429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59094 2.02189 1.22185 4.67789 3.42674

CAGE analysis