Hb_008165_030

Information

Type -
Description -
Location Contig8165: 69517-79149
Sequence    

Annotation

kegg
ID rcu:RCOM_0272150
description hypothetical protein
nr
ID XP_012081193.1
description PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
swissprot
ID Q6PR54
description Telomere-associated protein RIF1 OS=Mus musculus GN=Rif1 PE=1 SV=2
trembl
ID B9T137
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0272150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59443: 69489-69669 , PASA_asmbl_59448: 72590-72930 , PASA_asmbl_59449: 72967-73076 , PASA_asmbl_59451: 77575-77823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008165_030 0.0 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
2 Hb_002903_140 0.0613581742 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
3 Hb_030545_030 0.0621995283 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
4 Hb_001674_040 0.0629273237 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
5 Hb_010287_030 0.0707884622 - - conserved hypothetical protein [Ricinus communis]
6 Hb_096819_010 0.0710514205 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
7 Hb_004032_230 0.0729002303 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
8 Hb_000102_050 0.0747523285 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
9 Hb_000926_010 0.0773406263 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
10 Hb_000723_110 0.0782146514 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
11 Hb_007017_070 0.0784243472 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
12 Hb_004724_370 0.0788658411 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
13 Hb_102438_030 0.0796120044 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
14 Hb_011920_020 0.0813482813 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
15 Hb_001558_060 0.0816303791 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
16 Hb_000302_170 0.0828338952 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
17 Hb_000529_060 0.0862943556 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
18 Hb_000866_450 0.0871290959 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_000264_070 0.0875161595 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
20 Hb_000205_130 0.0880597906 - - calcium ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008165_030 Hb_008165_030 Hb_002903_140 Hb_002903_140 Hb_008165_030--Hb_002903_140 Hb_030545_030 Hb_030545_030 Hb_008165_030--Hb_030545_030 Hb_001674_040 Hb_001674_040 Hb_008165_030--Hb_001674_040 Hb_010287_030 Hb_010287_030 Hb_008165_030--Hb_010287_030 Hb_096819_010 Hb_096819_010 Hb_008165_030--Hb_096819_010 Hb_004032_230 Hb_004032_230 Hb_008165_030--Hb_004032_230 Hb_002903_140--Hb_030545_030 Hb_000977_300 Hb_000977_300 Hb_002903_140--Hb_000977_300 Hb_004319_050 Hb_004319_050 Hb_002903_140--Hb_004319_050 Hb_007017_070 Hb_007017_070 Hb_002903_140--Hb_007017_070 Hb_002903_140--Hb_096819_010 Hb_102438_030 Hb_102438_030 Hb_030545_030--Hb_102438_030 Hb_000227_310 Hb_000227_310 Hb_030545_030--Hb_000227_310 Hb_030545_030--Hb_007017_070 Hb_030545_030--Hb_096819_010 Hb_004724_370 Hb_004724_370 Hb_001674_040--Hb_004724_370 Hb_001723_140 Hb_001723_140 Hb_001674_040--Hb_001723_140 Hb_011920_020 Hb_011920_020 Hb_001674_040--Hb_011920_020 Hb_001584_350 Hb_001584_350 Hb_001674_040--Hb_001584_350 Hb_010661_020 Hb_010661_020 Hb_001674_040--Hb_010661_020 Hb_010287_030--Hb_004724_370 Hb_000302_170 Hb_000302_170 Hb_010287_030--Hb_000302_170 Hb_010287_030--Hb_001674_040 Hb_010287_030--Hb_030545_030 Hb_006573_160 Hb_006573_160 Hb_010287_030--Hb_006573_160 Hb_000958_150 Hb_000958_150 Hb_096819_010--Hb_000958_150 Hb_096819_010--Hb_011920_020 Hb_002902_020 Hb_002902_020 Hb_096819_010--Hb_002902_020 Hb_001534_210 Hb_001534_210 Hb_004032_230--Hb_001534_210 Hb_000264_070 Hb_000264_070 Hb_004032_230--Hb_000264_070 Hb_004032_230--Hb_102438_030 Hb_000102_050 Hb_000102_050 Hb_004032_230--Hb_000102_050 Hb_001231_090 Hb_001231_090 Hb_004032_230--Hb_001231_090 Hb_003849_140 Hb_003849_140 Hb_004032_230--Hb_003849_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.93352 10.5601 10.1042 5.01288 5.2136 5.51255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.74624 2.42841 2.65411 4.49419 4.25023

CAGE analysis