Hb_006501_010

Information

Type -
Description -
Location Contig6501: 17111-26658
Sequence    

Annotation

kegg
ID rcu:RCOM_1050370
description oligosaccharyl transferase, putative (EC:2.4.1.119)
nr
ID XP_011048329.1
description PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
swissprot
ID Q93ZY3
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A OS=Arabidopsis thaliana GN=STT3A PE=2 SV=1
trembl
ID B9RKK0
description Oligosaccharyl transferase, putative OS=Ricinus communis GN=RCOM_1050370 PE=4 SV=1
Gene Ontology
ID GO:0005886
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt3a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52520: 17113-26533
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006501_010 0.0 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
2 Hb_000994_020 0.0751235492 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
3 Hb_000082_010 0.0803977433 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
4 Hb_005723_020 0.083458245 - - conserved hypothetical protein [Ricinus communis]
5 Hb_015026_100 0.0853305695 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
6 Hb_007413_040 0.0856349392 - - myo inositol monophosphatase, putative [Ricinus communis]
7 Hb_002686_040 0.0864331955 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
8 Hb_001733_030 0.0878670354 - - PREDICTED: uncharacterized protein LOC100261386 isoform X2 [Vitis vinifera]
9 Hb_008397_010 0.0903940171 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
10 Hb_000122_080 0.0906364231 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
11 Hb_103747_020 0.094335099 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
12 Hb_006618_090 0.0958981375 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
13 Hb_000610_040 0.0967933705 - - PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
14 Hb_033642_040 0.0973647132 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
15 Hb_000134_250 0.097785283 - - protein with unknown function [Ricinus communis]
16 Hb_133702_030 0.0979920584 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
17 Hb_007894_160 0.098810334 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
18 Hb_002391_360 0.0993608758 - - hypothetical protein CICLE_v10026208mg [Citrus clementina]
19 Hb_000513_090 0.0997259354 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
20 Hb_005730_010 0.1000326983 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_006501_010 Hb_006501_010 Hb_000994_020 Hb_000994_020 Hb_006501_010--Hb_000994_020 Hb_000082_010 Hb_000082_010 Hb_006501_010--Hb_000082_010 Hb_005723_020 Hb_005723_020 Hb_006501_010--Hb_005723_020 Hb_015026_100 Hb_015026_100 Hb_006501_010--Hb_015026_100 Hb_007413_040 Hb_007413_040 Hb_006501_010--Hb_007413_040 Hb_002686_040 Hb_002686_040 Hb_006501_010--Hb_002686_040 Hb_000994_020--Hb_015026_100 Hb_000046_600 Hb_000046_600 Hb_000994_020--Hb_000046_600 Hb_000260_770 Hb_000260_770 Hb_000994_020--Hb_000260_770 Hb_000302_170 Hb_000302_170 Hb_000994_020--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_000994_020--Hb_000300_550 Hb_016777_040 Hb_016777_040 Hb_000082_010--Hb_016777_040 Hb_002471_240 Hb_002471_240 Hb_000082_010--Hb_002471_240 Hb_000373_080 Hb_000373_080 Hb_000082_010--Hb_000373_080 Hb_028872_070 Hb_028872_070 Hb_000082_010--Hb_028872_070 Hb_008114_040 Hb_008114_040 Hb_000082_010--Hb_008114_040 Hb_005723_020--Hb_002686_040 Hb_103747_020 Hb_103747_020 Hb_005723_020--Hb_103747_020 Hb_008226_090 Hb_008226_090 Hb_005723_020--Hb_008226_090 Hb_001135_120 Hb_001135_120 Hb_005723_020--Hb_001135_120 Hb_027654_020 Hb_027654_020 Hb_005723_020--Hb_027654_020 Hb_000933_010 Hb_000933_010 Hb_005723_020--Hb_000933_010 Hb_015026_100--Hb_000046_600 Hb_002092_070 Hb_002092_070 Hb_015026_100--Hb_002092_070 Hb_002045_250 Hb_002045_250 Hb_015026_100--Hb_002045_250 Hb_008397_010 Hb_008397_010 Hb_015026_100--Hb_008397_010 Hb_000019_190 Hb_000019_190 Hb_007413_040--Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_007413_040--Hb_023313_040 Hb_004096_160 Hb_004096_160 Hb_007413_040--Hb_004096_160 Hb_005730_010 Hb_005730_010 Hb_007413_040--Hb_005730_010 Hb_000236_490 Hb_000236_490 Hb_007413_040--Hb_000236_490 Hb_001931_030 Hb_001931_030 Hb_007413_040--Hb_001931_030 Hb_002686_040--Hb_103747_020 Hb_006618_090 Hb_006618_090 Hb_002686_040--Hb_006618_090 Hb_000174_060 Hb_000174_060 Hb_002686_040--Hb_000174_060 Hb_007894_160 Hb_007894_160 Hb_002686_040--Hb_007894_160 Hb_000398_080 Hb_000398_080 Hb_002686_040--Hb_000398_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3347 19.6053 32.6468 21.5173 20.7705 21.381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.7467 7.55996 8.70111 29.867 13.9503

CAGE analysis