Hb_000082_010

Information

Type -
Description -
Location Contig82: 60349-70030
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06680g
description POPTRDRAFT_207134; hypothetical protein
nr
ID XP_012079809.1
description PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
swissprot
ID Q9SS90
description E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1
trembl
ID A0A067K5E4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15336 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase rglg1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59544: 60422-69546 , PASA_asmbl_59545: 60506-69546 , PASA_asmbl_59547: 64131-64591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000082_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
2 Hb_016777_040 0.076698608 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
3 Hb_002471_240 0.0768282843 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
4 Hb_000373_080 0.0786082419 - - PREDICTED: serine decarboxylase [Jatropha curcas]
5 Hb_006501_010 0.0803977433 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
6 Hb_028872_070 0.0808255085 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
7 Hb_008114_040 0.0872637053 - - Fanconi anemia group D2 [Gossypium arboreum]
8 Hb_003363_080 0.0874144273 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
9 Hb_000661_040 0.0883849088 - - PREDICTED: dihydroxy-acid dehydratase, chloroplastic [Jatropha curcas]
10 Hb_000321_140 0.0894232669 - - RNA-binding protein, putative [Ricinus communis]
11 Hb_001377_310 0.0900862415 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
12 Hb_000603_030 0.0908075559 - - Ribonuclease III, putative [Ricinus communis]
13 Hb_133702_030 0.0936006824 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
14 Hb_012506_030 0.0939912661 - - AP-2 complex subunit alpha, putative [Ricinus communis]
15 Hb_007413_040 0.0941439772 - - myo inositol monophosphatase, putative [Ricinus communis]
16 Hb_002889_010 0.0947242369 - - ubx domain-containing, putative [Ricinus communis]
17 Hb_033642_040 0.0947886778 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
18 Hb_085742_010 0.0950564069 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
19 Hb_000182_040 0.0958876484 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
20 Hb_003186_020 0.0959392135 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000082_010 Hb_000082_010 Hb_016777_040 Hb_016777_040 Hb_000082_010--Hb_016777_040 Hb_002471_240 Hb_002471_240 Hb_000082_010--Hb_002471_240 Hb_000373_080 Hb_000373_080 Hb_000082_010--Hb_000373_080 Hb_006501_010 Hb_006501_010 Hb_000082_010--Hb_006501_010 Hb_028872_070 Hb_028872_070 Hb_000082_010--Hb_028872_070 Hb_008114_040 Hb_008114_040 Hb_000082_010--Hb_008114_040 Hb_002889_010 Hb_002889_010 Hb_016777_040--Hb_002889_010 Hb_016777_040--Hb_002471_240 Hb_001377_310 Hb_001377_310 Hb_016777_040--Hb_001377_310 Hb_016777_040--Hb_000373_080 Hb_001089_070 Hb_001089_070 Hb_016777_040--Hb_001089_070 Hb_002805_190 Hb_002805_190 Hb_016777_040--Hb_002805_190 Hb_002471_240--Hb_002889_010 Hb_003177_020 Hb_003177_020 Hb_002471_240--Hb_003177_020 Hb_028960_020 Hb_028960_020 Hb_002471_240--Hb_028960_020 Hb_003883_060 Hb_003883_060 Hb_002471_240--Hb_003883_060 Hb_002471_240--Hb_001377_310 Hb_003186_020 Hb_003186_020 Hb_000373_080--Hb_003186_020 Hb_000317_510 Hb_000317_510 Hb_000373_080--Hb_000317_510 Hb_000373_080--Hb_001377_310 Hb_001005_030 Hb_001005_030 Hb_000373_080--Hb_001005_030 Hb_000214_050 Hb_000214_050 Hb_000373_080--Hb_000214_050 Hb_000362_170 Hb_000362_170 Hb_000373_080--Hb_000362_170 Hb_000994_020 Hb_000994_020 Hb_006501_010--Hb_000994_020 Hb_005723_020 Hb_005723_020 Hb_006501_010--Hb_005723_020 Hb_015026_100 Hb_015026_100 Hb_006501_010--Hb_015026_100 Hb_007413_040 Hb_007413_040 Hb_006501_010--Hb_007413_040 Hb_002686_040 Hb_002686_040 Hb_006501_010--Hb_002686_040 Hb_000603_030 Hb_000603_030 Hb_028872_070--Hb_000603_030 Hb_000398_080 Hb_000398_080 Hb_028872_070--Hb_000398_080 Hb_160459_040 Hb_160459_040 Hb_028872_070--Hb_160459_040 Hb_004096_190 Hb_004096_190 Hb_028872_070--Hb_004096_190 Hb_009771_110 Hb_009771_110 Hb_028872_070--Hb_009771_110 Hb_133702_030 Hb_133702_030 Hb_028872_070--Hb_133702_030 Hb_000402_150 Hb_000402_150 Hb_008114_040--Hb_000402_150 Hb_000189_600 Hb_000189_600 Hb_008114_040--Hb_000189_600 Hb_004333_040 Hb_004333_040 Hb_008114_040--Hb_004333_040 Hb_006588_060 Hb_006588_060 Hb_008114_040--Hb_006588_060 Hb_002400_340 Hb_002400_340 Hb_008114_040--Hb_002400_340 Hb_000617_230 Hb_000617_230 Hb_008114_040--Hb_000617_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.074 11.7192 23.9318 14.0369 11.1036 17.3341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.04402 7.76221 9.33346 21.404 11.7887

CAGE analysis