Hb_002045_250

Information

Type -
Description -
Location Contig2045: 224377-231542
Sequence    

Annotation

kegg
ID pop:POPTR_0002s04800g
description POPTRDRAFT_410986; hypothetical protein
nr
ID XP_012092151.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
swissprot
ID Q9LY75
description Peptidyl-prolyl cis-trans isomerase CYP63 OS=Arabidopsis thaliana GN=CYP63 PE=1 SV=1
trembl
ID B9GS90
description Peptidyl-prolyl cis-trans isomerase OS=Populus trichocarpa GN=POPTR_0002s04800g PE=4 SV=2
Gene Ontology
ID GO:0016853
description peptidyl-prolyl cis-trans isomerase cyp63

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21056: 224513-232446 , PASA_asmbl_21057: 226878-232444 , PASA_asmbl_21058: 224883-225685
cDNA
(Sanger)
(ID:Location)		 036_G22.ab1: 227244-232444

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_250 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
2 Hb_002092_070 0.0477133454 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
3 Hb_004429_010 0.0612600961 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_001723_140 0.0680500768 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
5 Hb_009252_050 0.06875339 - - protein binding protein, putative [Ricinus communis]
6 Hb_000046_600 0.068900137 - - PREDICTED: cullin-1-like [Jatropha curcas]
7 Hb_000529_060 0.0714098165 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
8 Hb_001171_030 0.0722090643 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
9 Hb_004204_130 0.0723565928 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
10 Hb_000977_300 0.07236524 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
11 Hb_001584_350 0.0742996749 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
12 Hb_002284_170 0.0745502142 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
13 Hb_004645_070 0.0756066081 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
14 Hb_004109_370 0.0757721251 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
15 Hb_092000_010 0.0757753698 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
16 Hb_001085_110 0.077204419 - - T6D22.2 [Arabidopsis thaliana]
17 Hb_001221_090 0.0783011652 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
18 Hb_003142_040 0.0813484845 - - Sf3a3 [Gossypium arboreum]
19 Hb_015026_100 0.0816148125 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
20 Hb_000580_030 0.0817229115 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]

Gene co-expression network

sample Hb_002045_250 Hb_002045_250 Hb_002092_070 Hb_002092_070 Hb_002045_250--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_002045_250--Hb_004429_010 Hb_001723_140 Hb_001723_140 Hb_002045_250--Hb_001723_140 Hb_009252_050 Hb_009252_050 Hb_002045_250--Hb_009252_050 Hb_000046_600 Hb_000046_600 Hb_002045_250--Hb_000046_600 Hb_000529_060 Hb_000529_060 Hb_002045_250--Hb_000529_060 Hb_002092_070--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_002092_070--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_002092_070--Hb_001221_090 Hb_002092_070--Hb_009252_050 Hb_000958_150 Hb_000958_150 Hb_002092_070--Hb_000958_150 Hb_002027_280 Hb_002027_280 Hb_004429_010--Hb_002027_280 Hb_004429_010--Hb_009252_050 Hb_003124_160 Hb_003124_160 Hb_004429_010--Hb_003124_160 Hb_004429_010--Hb_002284_170 Hb_004429_010--Hb_001221_090 Hb_001171_030 Hb_001171_030 Hb_001723_140--Hb_001171_030 Hb_013358_070 Hb_013358_070 Hb_001723_140--Hb_013358_070 Hb_001584_350 Hb_001584_350 Hb_001723_140--Hb_001584_350 Hb_003142_040 Hb_003142_040 Hb_001723_140--Hb_003142_040 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_001723_140--Hb_000529_060 Hb_001085_110 Hb_001085_110 Hb_009252_050--Hb_001085_110 Hb_134362_010 Hb_134362_010 Hb_009252_050--Hb_134362_010 Hb_000479_240 Hb_000479_240 Hb_009252_050--Hb_000479_240 Hb_004109_370 Hb_004109_370 Hb_009252_050--Hb_004109_370 Hb_004204_130 Hb_004204_130 Hb_009252_050--Hb_004204_130 Hb_005403_010 Hb_005403_010 Hb_000046_600--Hb_005403_010 Hb_000046_600--Hb_000529_060 Hb_023344_140 Hb_023344_140 Hb_000046_600--Hb_023344_140 Hb_005333_140 Hb_005333_140 Hb_000046_600--Hb_005333_140 Hb_000994_020 Hb_000994_020 Hb_000046_600--Hb_000994_020 Hb_000977_300 Hb_000977_300 Hb_000046_600--Hb_000977_300 Hb_000529_060--Hb_000977_300 Hb_000996_020 Hb_000996_020 Hb_000529_060--Hb_000996_020 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020 Hb_000529_060--Hb_001171_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.0848 42.5685 31.3279 34.372 22.3005 28.066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0973 8.6134 10.7298 32.8116 23.7889

CAGE analysis