Hb_004204_130

Information

Type -
Description -
Location Contig4204: 79994-84942
Sequence    

Annotation

kegg
ID pxb:103930912
description uncharacterized LOC103930912
nr
ID XP_009338591.1
description PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
swissprot
ID Q9LDD4
description AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1
trembl
ID A0A061FY49
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_014163 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41530: 80127-85401 , PASA_asmbl_41531: 80127-82278 , PASA_asmbl_41532: 83443-85401 , PASA_asmbl_41534: 81186-81336 , PASA_asmbl_41535: 81430-81687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_130 0.0 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
2 Hb_031641_010 0.062163721 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009252_050 0.0631382996 - - protein binding protein, putative [Ricinus communis]
4 Hb_004429_010 0.0707603396 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_002045_250 0.0723565928 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
6 Hb_002849_170 0.073353812 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
7 Hb_133702_020 0.0754032332 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_003124_160 0.0767662958 - - dynamin, putative [Ricinus communis]
9 Hb_001085_110 0.0768203535 - - T6D22.2 [Arabidopsis thaliana]
10 Hb_004645_070 0.0776611738 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
11 Hb_005723_020 0.0778120198 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004129_070 0.0785010258 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
13 Hb_000139_130 0.0795974403 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
14 Hb_000336_020 0.079848409 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
15 Hb_000066_150 0.0811949978 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
16 Hb_004109_370 0.0813986957 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_000479_240 0.0818631968 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
18 Hb_008253_020 0.0829811217 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
19 Hb_031527_030 0.0831049748 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
20 Hb_010315_020 0.0838302615 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]

Gene co-expression network

sample Hb_004204_130 Hb_004204_130 Hb_031641_010 Hb_031641_010 Hb_004204_130--Hb_031641_010 Hb_009252_050 Hb_009252_050 Hb_004204_130--Hb_009252_050 Hb_004429_010 Hb_004429_010 Hb_004204_130--Hb_004429_010 Hb_002045_250 Hb_002045_250 Hb_004204_130--Hb_002045_250 Hb_002849_170 Hb_002849_170 Hb_004204_130--Hb_002849_170 Hb_133702_020 Hb_133702_020 Hb_004204_130--Hb_133702_020 Hb_000340_030 Hb_000340_030 Hb_031641_010--Hb_000340_030 Hb_000809_160 Hb_000809_160 Hb_031641_010--Hb_000809_160 Hb_031641_010--Hb_002849_170 Hb_001723_010 Hb_001723_010 Hb_031641_010--Hb_001723_010 Hb_000529_060 Hb_000529_060 Hb_031641_010--Hb_000529_060 Hb_001085_110 Hb_001085_110 Hb_009252_050--Hb_001085_110 Hb_134362_010 Hb_134362_010 Hb_009252_050--Hb_134362_010 Hb_009252_050--Hb_004429_010 Hb_000479_240 Hb_000479_240 Hb_009252_050--Hb_000479_240 Hb_004109_370 Hb_004109_370 Hb_009252_050--Hb_004109_370 Hb_002027_280 Hb_002027_280 Hb_004429_010--Hb_002027_280 Hb_002092_070 Hb_002092_070 Hb_004429_010--Hb_002092_070 Hb_003124_160 Hb_003124_160 Hb_004429_010--Hb_003124_160 Hb_002284_170 Hb_002284_170 Hb_004429_010--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_004429_010--Hb_001221_090 Hb_002045_250--Hb_002092_070 Hb_002045_250--Hb_004429_010 Hb_001723_140 Hb_001723_140 Hb_002045_250--Hb_001723_140 Hb_002045_250--Hb_009252_050 Hb_000046_600 Hb_000046_600 Hb_002045_250--Hb_000046_600 Hb_002045_250--Hb_000529_060 Hb_001673_050 Hb_001673_050 Hb_002849_170--Hb_001673_050 Hb_002849_170--Hb_000340_030 Hb_002849_170--Hb_001723_010 Hb_002849_170--Hb_000529_060 Hb_004976_010 Hb_004976_010 Hb_002849_170--Hb_004976_010 Hb_012055_110 Hb_012055_110 Hb_133702_020--Hb_012055_110 Hb_000066_150 Hb_000066_150 Hb_133702_020--Hb_000066_150 Hb_000059_230 Hb_000059_230 Hb_133702_020--Hb_000059_230 Hb_133702_020--Hb_003124_160 Hb_002007_110 Hb_002007_110 Hb_133702_020--Hb_002007_110 Hb_003805_040 Hb_003805_040 Hb_133702_020--Hb_003805_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.73452 13.6652 9.04052 12.4443 8.22164 10.8992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.11757 5.31091 4.70921 9.67333 9.28113

CAGE analysis