Hb_134362_010

Information

Type -
Description -
Location Contig134362: 43055-53544
Sequence    

Annotation

kegg
ID rcu:RCOM_1312920
description UBX domain-containing protein, putative
nr
ID XP_012086650.1
description PREDICTED: FAS-associated factor 2 [Jatropha curcas]
swissprot
ID Q9M0N1
description Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana GN=PUX10 PE=2 SV=1
trembl
ID A0A067JMP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20392 PE=4 SV=1
Gene Ontology
ID GO:0005886
description fas-associated factor 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09747: 43074-43505 , PASA_asmbl_09748: 43601-45631 , PASA_asmbl_09750: 46579-53585
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134362_010 0.0 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
2 Hb_009252_050 0.0532521189 - - protein binding protein, putative [Ricinus communis]
3 Hb_001668_010 0.0597116329 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
4 Hb_001673_050 0.0649816351 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
5 Hb_002849_170 0.0739843302 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
6 Hb_000352_070 0.0740291205 - - Potassium transporter, putative [Ricinus communis]
7 Hb_004429_010 0.0766234239 - - calcineurin-like phosphoesterase [Manihot esculenta]
8 Hb_002027_280 0.0791642073 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
9 Hb_000479_240 0.0796843349 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
10 Hb_001454_170 0.0806235627 - - PREDICTED: uncharacterized protein LOC105643431 [Jatropha curcas]
11 Hb_133702_020 0.0806337052 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_031527_030 0.0809666101 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
13 Hb_000635_030 0.0809886084 - - mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]
14 Hb_000809_170 0.0821361111 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
15 Hb_000494_050 0.0824180787 - - cationic amino acid transporter, putative [Ricinus communis]
16 Hb_005215_010 0.0831625695 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
17 Hb_000949_020 0.0833070377 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
18 Hb_003124_160 0.0839034161 - - dynamin, putative [Ricinus communis]
19 Hb_000152_360 0.0840945142 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP53 [Jatropha curcas]
20 Hb_007810_110 0.0852326623 - - PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]

Gene co-expression network

sample Hb_134362_010 Hb_134362_010 Hb_009252_050 Hb_009252_050 Hb_134362_010--Hb_009252_050 Hb_001668_010 Hb_001668_010 Hb_134362_010--Hb_001668_010 Hb_001673_050 Hb_001673_050 Hb_134362_010--Hb_001673_050 Hb_002849_170 Hb_002849_170 Hb_134362_010--Hb_002849_170 Hb_000352_070 Hb_000352_070 Hb_134362_010--Hb_000352_070 Hb_004429_010 Hb_004429_010 Hb_134362_010--Hb_004429_010 Hb_001085_110 Hb_001085_110 Hb_009252_050--Hb_001085_110 Hb_009252_050--Hb_004429_010 Hb_000479_240 Hb_000479_240 Hb_009252_050--Hb_000479_240 Hb_004109_370 Hb_004109_370 Hb_009252_050--Hb_004109_370 Hb_004204_130 Hb_004204_130 Hb_009252_050--Hb_004204_130 Hb_001668_010--Hb_001673_050 Hb_005542_140 Hb_005542_140 Hb_001668_010--Hb_005542_140 Hb_000635_030 Hb_000635_030 Hb_001668_010--Hb_000635_030 Hb_027472_220 Hb_027472_220 Hb_001668_010--Hb_027472_220 Hb_000011_100 Hb_000011_100 Hb_001668_010--Hb_000011_100 Hb_001673_050--Hb_002849_170 Hb_000099_040 Hb_000099_040 Hb_001673_050--Hb_000099_040 Hb_004976_010 Hb_004976_010 Hb_001673_050--Hb_004976_010 Hb_007426_060 Hb_007426_060 Hb_001673_050--Hb_007426_060 Hb_001673_050--Hb_004429_010 Hb_000340_030 Hb_000340_030 Hb_002849_170--Hb_000340_030 Hb_031641_010 Hb_031641_010 Hb_002849_170--Hb_031641_010 Hb_001723_010 Hb_001723_010 Hb_002849_170--Hb_001723_010 Hb_000529_060 Hb_000529_060 Hb_002849_170--Hb_000529_060 Hb_002849_170--Hb_004976_010 Hb_002027_280 Hb_002027_280 Hb_000352_070--Hb_002027_280 Hb_000949_020 Hb_000949_020 Hb_000352_070--Hb_000949_020 Hb_000352_070--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_000352_070--Hb_002284_170 Hb_004785_030 Hb_004785_030 Hb_000352_070--Hb_004785_030 Hb_004429_010--Hb_002027_280 Hb_002092_070 Hb_002092_070 Hb_004429_010--Hb_002092_070 Hb_003124_160 Hb_003124_160 Hb_004429_010--Hb_003124_160 Hb_004429_010--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_004429_010--Hb_001221_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.56778 18.7179 10.6911 16.7788 16.8475 10.0916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.96519 7.64219 6.42085 13.7878 13.6458

CAGE analysis