Hb_000796_120

Information

Type -
Description -
Location Contig796: 91235-96614
Sequence    

Annotation

kegg
ID rcu:RCOM_1345900
description DNA methyltransferase 1-associated protein, putative
nr
ID XP_012082946.1
description PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
swissprot
ID Q8VZL6
description SWR1-complex protein 4 OS=Arabidopsis thaliana GN=SWC4 PE=1 SV=1
trembl
ID B9RN98
description DNA methyltransferase 1-associated protein, putative OS=Ricinus communis GN=RCOM_1345900 PE=4 SV=1
Gene Ontology
ID GO:0035267
description myb-like transcription factor family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58550: 91490-96042 , PASA_asmbl_58551: 91620-93088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_120 0.0 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
2 Hb_004319_050 0.0627204864 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
3 Hb_004526_010 0.0723050592 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
4 Hb_002107_100 0.075565972 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
5 Hb_000418_050 0.0814759032 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
6 Hb_000261_280 0.0825027009 - - BnaA10g23810D [Brassica napus]
7 Hb_009178_010 0.0844710318 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
8 Hb_000956_040 0.0853075176 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
9 Hb_001009_120 0.0853504378 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
10 Hb_000699_210 0.0865403526 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
11 Hb_000270_700 0.0921564448 - - PREDICTED: protease Do-like 9 [Populus euphratica]
12 Hb_000048_080 0.0923854993 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
13 Hb_000638_280 0.0941223495 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
14 Hb_003992_180 0.0942927645 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
15 Hb_000421_110 0.0949418598 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
16 Hb_001369_030 0.0951737875 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
17 Hb_010775_010 0.0955267323 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
18 Hb_010287_020 0.095862014 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
19 Hb_000034_110 0.0966708763 - - sentrin/sumo-specific protease, putative [Ricinus communis]
20 Hb_005288_140 0.0969349764 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]

Gene co-expression network

sample Hb_000796_120 Hb_000796_120 Hb_004319_050 Hb_004319_050 Hb_000796_120--Hb_004319_050 Hb_004526_010 Hb_004526_010 Hb_000796_120--Hb_004526_010 Hb_002107_100 Hb_002107_100 Hb_000796_120--Hb_002107_100 Hb_000418_050 Hb_000418_050 Hb_000796_120--Hb_000418_050 Hb_000261_280 Hb_000261_280 Hb_000796_120--Hb_000261_280 Hb_009178_010 Hb_009178_010 Hb_000796_120--Hb_009178_010 Hb_005288_140 Hb_005288_140 Hb_004319_050--Hb_005288_140 Hb_004319_050--Hb_004526_010 Hb_002903_140 Hb_002903_140 Hb_004319_050--Hb_002903_140 Hb_152910_010 Hb_152910_010 Hb_004319_050--Hb_152910_010 Hb_011249_060 Hb_011249_060 Hb_004319_050--Hb_011249_060 Hb_030545_030 Hb_030545_030 Hb_004526_010--Hb_030545_030 Hb_003992_180 Hb_003992_180 Hb_004526_010--Hb_003992_180 Hb_009486_160 Hb_009486_160 Hb_004526_010--Hb_009486_160 Hb_159295_010 Hb_159295_010 Hb_004526_010--Hb_159295_010 Hb_000270_700 Hb_000270_700 Hb_002107_100--Hb_000270_700 Hb_002107_100--Hb_000418_050 Hb_104920_010 Hb_104920_010 Hb_002107_100--Hb_104920_010 Hb_000034_110 Hb_000034_110 Hb_002107_100--Hb_000034_110 Hb_003428_090 Hb_003428_090 Hb_002107_100--Hb_003428_090 Hb_000418_050--Hb_000270_700 Hb_001133_090 Hb_001133_090 Hb_000418_050--Hb_001133_090 Hb_000421_110 Hb_000421_110 Hb_000418_050--Hb_000421_110 Hb_005885_030 Hb_005885_030 Hb_000418_050--Hb_005885_030 Hb_000418_050--Hb_000261_280 Hb_000803_180 Hb_000803_180 Hb_000261_280--Hb_000803_180 Hb_003777_130 Hb_003777_130 Hb_000261_280--Hb_003777_130 Hb_033152_090 Hb_033152_090 Hb_000261_280--Hb_033152_090 Hb_000261_280--Hb_004319_050 Hb_004718_060 Hb_004718_060 Hb_009178_010--Hb_004718_060 Hb_000260_760 Hb_000260_760 Hb_009178_010--Hb_000260_760 Hb_002686_410 Hb_002686_410 Hb_009178_010--Hb_002686_410 Hb_009178_010--Hb_000034_110 Hb_000030_140 Hb_000030_140 Hb_009178_010--Hb_000030_140 Hb_000956_040 Hb_000956_040 Hb_009178_010--Hb_000956_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.19521 22.5268 21.2431 9.57772 6.11359 5.36192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.75877 5.27849 3.07077 10.5002 9.18565

CAGE analysis