Hb_000421_110

Information

Type -
Description -
Location Contig421: 73026-83817
Sequence    

Annotation

kegg
ID rcu:RCOM_0624680
description vacuolar proton atpase, putative (EC:3.6.3.14)
nr
ID XP_012064902.1
description PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
swissprot
ID Q8RWZ7
description V-type proton ATPase subunit a1 OS=Arabidopsis thaliana GN=VHA-a1 PE=2 SV=1
trembl
ID A0A067LHP8
description V-type proton ATPase subunit a OS=Jatropha curcas GN=JCGZ_05592 PE=3 SV=1
Gene Ontology
ID GO:0000220
description vacuolar proton atpase a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41606: 72952-83787 , PASA_asmbl_41607: 75478-83787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_110 0.0 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
2 Hb_001133_090 0.0575553921 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
3 Hb_007031_040 0.0666873318 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
4 Hb_000418_050 0.0678585073 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
5 Hb_000270_700 0.0717490459 - - PREDICTED: protease Do-like 9 [Populus euphratica]
6 Hb_001911_010 0.0747550519 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
7 Hb_004319_050 0.077683699 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
8 Hb_000270_110 0.0825721602 - - PREDICTED: calcium-dependent protein kinase 10 [Jatropha curcas]
9 Hb_003018_030 0.0843917162 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
10 Hb_004526_010 0.0854549953 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
11 Hb_005885_030 0.086001715 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
12 Hb_001009_120 0.0870119694 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
13 Hb_001410_130 0.0876290829 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
14 Hb_159295_010 0.0883854315 - - hypothetical protein RCOM_1520720 [Ricinus communis]
15 Hb_005403_010 0.0904493005 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
16 Hb_002387_040 0.0905973038 - - protein transporter, putative [Ricinus communis]
17 Hb_000034_110 0.090711681 - - sentrin/sumo-specific protease, putative [Ricinus communis]
18 Hb_002248_120 0.0938647247 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
19 Hb_001009_090 0.0942132748 - - CDK protein [Hevea brasiliensis]
20 Hb_000796_120 0.0949418598 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000421_110 Hb_000421_110 Hb_001133_090 Hb_001133_090 Hb_000421_110--Hb_001133_090 Hb_007031_040 Hb_007031_040 Hb_000421_110--Hb_007031_040 Hb_000418_050 Hb_000418_050 Hb_000421_110--Hb_000418_050 Hb_000270_700 Hb_000270_700 Hb_000421_110--Hb_000270_700 Hb_001911_010 Hb_001911_010 Hb_000421_110--Hb_001911_010 Hb_004319_050 Hb_004319_050 Hb_000421_110--Hb_004319_050 Hb_001133_090--Hb_000418_050 Hb_001133_090--Hb_007031_040 Hb_005885_030 Hb_005885_030 Hb_001133_090--Hb_005885_030 Hb_001133_090--Hb_000270_700 Hb_010775_010 Hb_010775_010 Hb_001133_090--Hb_010775_010 Hb_007031_040--Hb_001911_010 Hb_000270_110 Hb_000270_110 Hb_007031_040--Hb_000270_110 Hb_159295_010 Hb_159295_010 Hb_007031_040--Hb_159295_010 Hb_001410_130 Hb_001410_130 Hb_007031_040--Hb_001410_130 Hb_000418_050--Hb_000270_700 Hb_000418_050--Hb_005885_030 Hb_000261_280 Hb_000261_280 Hb_000418_050--Hb_000261_280 Hb_002107_100 Hb_002107_100 Hb_000418_050--Hb_002107_100 Hb_000034_110 Hb_000034_110 Hb_000270_700--Hb_000034_110 Hb_002686_410 Hb_002686_410 Hb_000270_700--Hb_002686_410 Hb_000270_700--Hb_005885_030 Hb_003725_010 Hb_003725_010 Hb_000270_700--Hb_003725_010 Hb_001911_010--Hb_159295_010 Hb_002248_120 Hb_002248_120 Hb_001911_010--Hb_002248_120 Hb_001911_010--Hb_001410_130 Hb_005403_010 Hb_005403_010 Hb_001911_010--Hb_005403_010 Hb_005288_140 Hb_005288_140 Hb_004319_050--Hb_005288_140 Hb_004526_010 Hb_004526_010 Hb_004319_050--Hb_004526_010 Hb_000796_120 Hb_000796_120 Hb_004319_050--Hb_000796_120 Hb_002903_140 Hb_002903_140 Hb_004319_050--Hb_002903_140 Hb_152910_010 Hb_152910_010 Hb_004319_050--Hb_152910_010 Hb_011249_060 Hb_011249_060 Hb_004319_050--Hb_011249_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.29177 28.7304 22.2911 15.56 7.32793 6.09834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.99903 3.09075 6.19336 11.8565 10.4579

CAGE analysis