Hb_001911_010

Information

Type -
Description -
Location Contig1911: 31751-38046
Sequence    

Annotation

kegg
ID rcu:RCOM_1426850
description hypothetical protein
nr
ID XP_012068525.1
description PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
swissprot
ID Q9SLK2
description ALA-interacting subunit 3 OS=Arabidopsis thaliana GN=ALIS3 PE=1 SV=1
trembl
ID A0A067KXV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03788 PE=4 SV=1
Gene Ontology
ID GO:0016020
description lem3 (ligand-effect modulator 3) family protein cdc50 family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19056: 31708-37997
cDNA
(Sanger)
(ID:Location)		 044_O18.ab1: 31708-34200 , 046_N22.ab1: 31775-34275

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001911_010 0.0 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
2 Hb_159295_010 0.0655136952 - - hypothetical protein RCOM_1520720 [Ricinus communis]
3 Hb_007031_040 0.0695361829 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
4 Hb_002248_120 0.0719626195 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
5 Hb_001410_130 0.0726528347 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
6 Hb_000421_110 0.0747550519 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
7 Hb_005403_010 0.0806532276 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
8 Hb_005885_030 0.085063849 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
9 Hb_003895_020 0.0854422645 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
10 Hb_000941_080 0.0861981861 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
11 Hb_006615_030 0.0887949852 - - prolyl oligopeptidase family protein [Populus trichocarpa]
12 Hb_170077_010 0.0899203877 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
13 Hb_001257_100 0.0913756196 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
14 Hb_000260_760 0.0917213639 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
15 Hb_020805_150 0.0920100832 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_001259_110 0.0927788077 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
17 Hb_004696_070 0.0935334162 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
18 Hb_001133_090 0.0939077638 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
19 Hb_000110_350 0.0944467525 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
20 Hb_010775_010 0.0947481367 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001911_010 Hb_001911_010 Hb_159295_010 Hb_159295_010 Hb_001911_010--Hb_159295_010 Hb_007031_040 Hb_007031_040 Hb_001911_010--Hb_007031_040 Hb_002248_120 Hb_002248_120 Hb_001911_010--Hb_002248_120 Hb_001410_130 Hb_001410_130 Hb_001911_010--Hb_001410_130 Hb_000421_110 Hb_000421_110 Hb_001911_010--Hb_000421_110 Hb_005403_010 Hb_005403_010 Hb_001911_010--Hb_005403_010 Hb_005765_040 Hb_005765_040 Hb_159295_010--Hb_005765_040 Hb_002812_010 Hb_002812_010 Hb_159295_010--Hb_002812_010 Hb_002249_050 Hb_002249_050 Hb_159295_010--Hb_002249_050 Hb_004526_010 Hb_004526_010 Hb_159295_010--Hb_004526_010 Hb_011249_060 Hb_011249_060 Hb_159295_010--Hb_011249_060 Hb_007031_040--Hb_000421_110 Hb_001133_090 Hb_001133_090 Hb_007031_040--Hb_001133_090 Hb_000270_110 Hb_000270_110 Hb_007031_040--Hb_000270_110 Hb_007031_040--Hb_159295_010 Hb_007031_040--Hb_001410_130 Hb_005885_030 Hb_005885_030 Hb_002248_120--Hb_005885_030 Hb_013405_180 Hb_013405_180 Hb_002248_120--Hb_013405_180 Hb_013358_060 Hb_013358_060 Hb_002248_120--Hb_013358_060 Hb_002387_040 Hb_002387_040 Hb_002248_120--Hb_002387_040 Hb_004696_070 Hb_004696_070 Hb_002248_120--Hb_004696_070 Hb_000941_080 Hb_000941_080 Hb_001410_130--Hb_000941_080 Hb_001009_090 Hb_001009_090 Hb_001410_130--Hb_001009_090 Hb_006054_030 Hb_006054_030 Hb_001410_130--Hb_006054_030 Hb_002119_090 Hb_002119_090 Hb_001410_130--Hb_002119_090 Hb_044653_020 Hb_044653_020 Hb_001410_130--Hb_044653_020 Hb_000421_110--Hb_001133_090 Hb_000418_050 Hb_000418_050 Hb_000421_110--Hb_000418_050 Hb_000270_700 Hb_000270_700 Hb_000421_110--Hb_000270_700 Hb_004319_050 Hb_004319_050 Hb_000421_110--Hb_004319_050 Hb_170077_010 Hb_170077_010 Hb_005403_010--Hb_170077_010 Hb_000046_600 Hb_000046_600 Hb_005403_010--Hb_000046_600 Hb_023344_140 Hb_023344_140 Hb_005403_010--Hb_023344_140 Hb_000640_190 Hb_000640_190 Hb_005403_010--Hb_000640_190 Hb_000110_350 Hb_000110_350 Hb_005403_010--Hb_000110_350 Hb_000260_760 Hb_000260_760 Hb_005403_010--Hb_000260_760
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2065 128.751 72.1252 69.5672 42.3038 33.5636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0205 13.8644 24.0749 48.1621 58.1538

CAGE analysis