Hb_044653_020

Information

Type transcription factor, desease resistance
Description TF Family: GNAT, Gene Name: NB-ARC
Location Contig44653: 8069-45256
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26900g
description POPTRDRAFT_549273; NBS-LRR resistance gene-like protein ARGH30
nr
ID KDP27350.1
description hypothetical protein JCGZ_20174 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067K520
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20174 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43040: 8917-9051 , PASA_asmbl_43041: 9681-9886 , PASA_asmbl_43042: 10420-10635 , PASA_asmbl_43043: 28359-33064 , PASA_asmbl_43044: 10785-31921 , PASA_asmbl_43045: 23967-28176 , PASA_asmbl_43048: 10785-11373 , PASA_asmbl_43049: 27045-27250 , PASA_asmbl_43050: 22525-22658 , PASA_asmbl_43053: 13676-14167 , PASA_asmbl_43054: 19399-19791 , PASA_asmbl_43055: 19166-19335 , PASA_asmbl_43057: 34126-34833 , PASA_asmbl_43059: 36428-37135 , PASA_asmbl_43060: 37137-37434 , PASA_asmbl_43062: 38294-38830 , PASA_asmbl_43063: 39345-40253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044653_020 0.0 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
2 Hb_012368_100 0.0609226039 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
3 Hb_000896_060 0.0639027866 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_004785_030 0.0676904042 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
5 Hb_000117_070 0.0737308296 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
6 Hb_005188_040 0.0744109875 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
7 Hb_002387_070 0.077493663 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
8 Hb_009302_030 0.0809658603 - - hypothetical protein RCOM_1176340 [Ricinus communis]
9 Hb_020805_150 0.0820905572 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000526_060 0.0825882498 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
11 Hb_003895_020 0.0832646122 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
12 Hb_014834_060 0.0840078493 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
13 Hb_012082_010 0.0842115809 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
14 Hb_001410_130 0.0849582926 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
15 Hb_000460_060 0.0862995571 - - importin beta-1, putative [Ricinus communis]
16 Hb_002119_090 0.0873485686 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
17 Hb_003604_050 0.0876222781 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
18 Hb_000751_140 0.0880127136 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
19 Hb_005765_040 0.0895067995 - - transcription elongation factor s-II, putative [Ricinus communis]
20 Hb_008686_020 0.0903523948 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_044653_020 Hb_044653_020 Hb_012368_100 Hb_012368_100 Hb_044653_020--Hb_012368_100 Hb_000896_060 Hb_000896_060 Hb_044653_020--Hb_000896_060 Hb_004785_030 Hb_004785_030 Hb_044653_020--Hb_004785_030 Hb_000117_070 Hb_000117_070 Hb_044653_020--Hb_000117_070 Hb_005188_040 Hb_005188_040 Hb_044653_020--Hb_005188_040 Hb_002387_070 Hb_002387_070 Hb_044653_020--Hb_002387_070 Hb_012368_100--Hb_000117_070 Hb_012368_100--Hb_000896_060 Hb_012368_100--Hb_002387_070 Hb_012368_100--Hb_004785_030 Hb_000703_130 Hb_000703_130 Hb_012368_100--Hb_000703_130 Hb_000526_060 Hb_000526_060 Hb_000896_060--Hb_000526_060 Hb_014834_060 Hb_014834_060 Hb_000896_060--Hb_014834_060 Hb_000896_060--Hb_000117_070 Hb_000123_350 Hb_000123_350 Hb_000896_060--Hb_000123_350 Hb_002119_090 Hb_002119_090 Hb_004785_030--Hb_002119_090 Hb_000700_060 Hb_000700_060 Hb_004785_030--Hb_000700_060 Hb_004785_030--Hb_005188_040 Hb_003604_050 Hb_003604_050 Hb_004785_030--Hb_003604_050 Hb_020805_150 Hb_020805_150 Hb_004785_030--Hb_020805_150 Hb_000117_070--Hb_000526_060 Hb_120470_010 Hb_120470_010 Hb_000117_070--Hb_120470_010 Hb_000117_070--Hb_000703_130 Hb_002542_130 Hb_002542_130 Hb_005188_040--Hb_002542_130 Hb_001545_150 Hb_001545_150 Hb_005188_040--Hb_001545_150 Hb_011242_060 Hb_011242_060 Hb_005188_040--Hb_011242_060 Hb_000265_090 Hb_000265_090 Hb_005188_040--Hb_000265_090 Hb_009028_010 Hb_009028_010 Hb_005188_040--Hb_009028_010 Hb_000460_060 Hb_000460_060 Hb_002387_070--Hb_000460_060 Hb_002387_070--Hb_000896_060 Hb_002387_070--Hb_000117_070 Hb_002387_070--Hb_000526_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50519 6.47415 2.25624 2.32714 2.39475 1.91096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.722473 0.855334 1.37916 1.8908 2.50649

CAGE analysis