Hb_012368_100

Information

Type -
Description -
Location Contig12368: 87573-89165
Sequence    

Annotation

kegg
ID rcu:RCOM_0146070
description hypothetical protein
nr
ID XP_012076269.1
description PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KH06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12826 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012368_100 0.0 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
2 Hb_044653_020 0.0609226039 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
3 Hb_000117_070 0.0623235384 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
4 Hb_000896_060 0.0661635666 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_002387_070 0.0747590493 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
6 Hb_004785_030 0.0761126866 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
7 Hb_000703_130 0.079042459 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
8 Hb_000526_060 0.0819156729 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
9 Hb_000265_090 0.085148197 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
10 Hb_002687_090 0.0861516454 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
11 Hb_003047_020 0.0874709283 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
12 Hb_000720_150 0.0876128353 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]
13 Hb_004032_040 0.0877055513 - - unknown [Medicago truncatula]
14 Hb_000703_200 0.089055548 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
15 Hb_014834_060 0.0892806889 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
16 Hb_005765_040 0.0899037983 - - transcription elongation factor s-II, putative [Ricinus communis]
17 Hb_021596_010 0.0899210594 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
18 Hb_020805_150 0.0900526926 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_005188_040 0.090122965 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
20 Hb_009302_030 0.0916142726 - - hypothetical protein RCOM_1176340 [Ricinus communis]

Gene co-expression network

sample Hb_012368_100 Hb_012368_100 Hb_044653_020 Hb_044653_020 Hb_012368_100--Hb_044653_020 Hb_000117_070 Hb_000117_070 Hb_012368_100--Hb_000117_070 Hb_000896_060 Hb_000896_060 Hb_012368_100--Hb_000896_060 Hb_002387_070 Hb_002387_070 Hb_012368_100--Hb_002387_070 Hb_004785_030 Hb_004785_030 Hb_012368_100--Hb_004785_030 Hb_000703_130 Hb_000703_130 Hb_012368_100--Hb_000703_130 Hb_044653_020--Hb_000896_060 Hb_044653_020--Hb_004785_030 Hb_044653_020--Hb_000117_070 Hb_005188_040 Hb_005188_040 Hb_044653_020--Hb_005188_040 Hb_044653_020--Hb_002387_070 Hb_000117_070--Hb_000896_060 Hb_000526_060 Hb_000526_060 Hb_000117_070--Hb_000526_060 Hb_120470_010 Hb_120470_010 Hb_000117_070--Hb_120470_010 Hb_000117_070--Hb_000703_130 Hb_000896_060--Hb_000526_060 Hb_014834_060 Hb_014834_060 Hb_000896_060--Hb_014834_060 Hb_000123_350 Hb_000123_350 Hb_000896_060--Hb_000123_350 Hb_000460_060 Hb_000460_060 Hb_002387_070--Hb_000460_060 Hb_002387_070--Hb_000896_060 Hb_002387_070--Hb_000117_070 Hb_002387_070--Hb_000526_060 Hb_002119_090 Hb_002119_090 Hb_004785_030--Hb_002119_090 Hb_000700_060 Hb_000700_060 Hb_004785_030--Hb_000700_060 Hb_004785_030--Hb_005188_040 Hb_003604_050 Hb_003604_050 Hb_004785_030--Hb_003604_050 Hb_020805_150 Hb_020805_150 Hb_004785_030--Hb_020805_150 Hb_000265_090 Hb_000265_090 Hb_000703_130--Hb_000265_090 Hb_000176_100 Hb_000176_100 Hb_000703_130--Hb_000176_100 Hb_007818_030 Hb_007818_030 Hb_000703_130--Hb_007818_030 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_000579_010 Hb_000579_010 Hb_000703_130--Hb_000579_010 Hb_002687_090 Hb_002687_090 Hb_000703_130--Hb_002687_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.8134 103.782 30.7427 36.5712 43.9475 28.8731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7087 12.6359 26.0817 43.4276 46.5056

CAGE analysis