Hb_020805_150

Information

Type -
Description -
Location Contig20805: 118854-123171
Sequence    

Annotation

kegg
ID rcu:RCOM_1601650
description ubiquitin-protein ligase, putative
nr
ID XP_002510699.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9SFX2
description U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1
trembl
ID B9R8Q6
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1601650 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21533: 118574-122600 , PASA_asmbl_21534: 118574-123082 , PASA_asmbl_21535: 122773-122899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_150 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_022425_060 0.0617436305 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
3 Hb_002928_190 0.0647927071 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
4 Hb_170077_010 0.0699289125 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
5 Hb_003918_030 0.0720976015 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
6 Hb_012490_010 0.0724559197 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
7 Hb_005649_080 0.0725048387 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
8 Hb_003047_020 0.0745677204 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
9 Hb_000479_070 0.0748870092 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
10 Hb_004785_030 0.0750109918 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
11 Hb_004696_070 0.0791313934 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
12 Hb_000110_350 0.0796390687 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
13 Hb_009302_030 0.0808116431 - - hypothetical protein RCOM_1176340 [Ricinus communis]
14 Hb_026198_060 0.0820743564 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
15 Hb_044653_020 0.0820905572 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
16 Hb_001828_170 0.08216488 - - PREDICTED: protein TPLATE [Jatropha curcas]
17 Hb_001545_150 0.0838134887 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
18 Hb_022425_030 0.0843395926 - - PREDICTED: casein kinase I [Jatropha curcas]
19 Hb_000703_200 0.0844474512 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
20 Hb_000649_250 0.086164825 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_020805_150 Hb_020805_150 Hb_022425_060 Hb_022425_060 Hb_020805_150--Hb_022425_060 Hb_002928_190 Hb_002928_190 Hb_020805_150--Hb_002928_190 Hb_170077_010 Hb_170077_010 Hb_020805_150--Hb_170077_010 Hb_003918_030 Hb_003918_030 Hb_020805_150--Hb_003918_030 Hb_012490_010 Hb_012490_010 Hb_020805_150--Hb_012490_010 Hb_005649_080 Hb_005649_080 Hb_020805_150--Hb_005649_080 Hb_001828_170 Hb_001828_170 Hb_022425_060--Hb_001828_170 Hb_001329_200 Hb_001329_200 Hb_022425_060--Hb_001329_200 Hb_010407_080 Hb_010407_080 Hb_022425_060--Hb_010407_080 Hb_007839_020 Hb_007839_020 Hb_022425_060--Hb_007839_020 Hb_022425_060--Hb_003918_030 Hb_002928_190--Hb_012490_010 Hb_002928_190--Hb_005649_080 Hb_003604_050 Hb_003604_050 Hb_002928_190--Hb_003604_050 Hb_008686_020 Hb_008686_020 Hb_002928_190--Hb_008686_020 Hb_003939_060 Hb_003939_060 Hb_002928_190--Hb_003939_060 Hb_000110_350 Hb_000110_350 Hb_170077_010--Hb_000110_350 Hb_005403_010 Hb_005403_010 Hb_170077_010--Hb_005403_010 Hb_023344_140 Hb_023344_140 Hb_170077_010--Hb_023344_140 Hb_000358_220 Hb_000358_220 Hb_170077_010--Hb_000358_220 Hb_000996_020 Hb_000996_020 Hb_170077_010--Hb_000996_020 Hb_002461_020 Hb_002461_020 Hb_170077_010--Hb_002461_020 Hb_000479_070 Hb_000479_070 Hb_003918_030--Hb_000479_070 Hb_001545_150 Hb_001545_150 Hb_003918_030--Hb_001545_150 Hb_001473_110 Hb_001473_110 Hb_003918_030--Hb_001473_110 Hb_003929_210 Hb_003929_210 Hb_003918_030--Hb_003929_210 Hb_003918_030--Hb_003939_060 Hb_003918_030--Hb_000110_350 Hb_004696_070 Hb_004696_070 Hb_012490_010--Hb_004696_070 Hb_012490_010--Hb_008686_020 Hb_004551_020 Hb_004551_020 Hb_012490_010--Hb_004551_020 Hb_000170_100 Hb_000170_100 Hb_012490_010--Hb_000170_100 Hb_001226_110 Hb_001226_110 Hb_005649_080--Hb_001226_110 Hb_005649_080--Hb_170077_010 Hb_005649_080--Hb_000358_220 Hb_005649_080--Hb_003939_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6611 48.4264 21.9149 27.3927 16.6487 13.8657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.88859 8.41272 17.4506 19.5475 23.9659

CAGE analysis