Hb_000117_070

Information

Type -
Description -
Location Contig117: 100212-102599
Sequence    

Annotation

kegg
ID rcu:RCOM_1500890
description zinc finger protein, putative
nr
ID XP_012090468.1
description PREDICTED: branchpoint-bridging protein [Jatropha curcas]
swissprot
ID P0CO44
description Branchpoint-bridging protein OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=BBP PE=3 SV=1
trembl
ID A0A067JR06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26276 PE=4 SV=1
Gene Ontology
ID GO:0000166
description branchpoint-bridging protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05267: 100279-103934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000117_070 0.0 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
2 Hb_000896_060 0.0597894729 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_012368_100 0.0623235384 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
4 Hb_000526_060 0.0650852722 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
5 Hb_044653_020 0.0737308296 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
6 Hb_120470_010 0.07514026 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
7 Hb_000703_130 0.0775472114 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
8 Hb_155159_010 0.0797607162 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
9 Hb_011202_030 0.0821371163 - - arsenite-resistance protein, putative [Ricinus communis]
10 Hb_003604_050 0.0846255157 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
11 Hb_000949_010 0.0848877206 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
12 Hb_014834_060 0.0851244533 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
13 Hb_007818_030 0.0860119644 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
14 Hb_002687_090 0.0869002536 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
15 Hb_014720_020 0.088220501 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
16 Hb_002005_120 0.0884440447 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
17 Hb_005765_040 0.0899606045 - - transcription elongation factor s-II, putative [Ricinus communis]
18 Hb_000836_020 0.0904025921 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
19 Hb_003604_040 0.0917849072 - - Serine/threonine-protein kinase sepA [Morus notabilis]
20 Hb_004032_040 0.0943120359 - - unknown [Medicago truncatula]

Gene co-expression network

sample Hb_000117_070 Hb_000117_070 Hb_000896_060 Hb_000896_060 Hb_000117_070--Hb_000896_060 Hb_012368_100 Hb_012368_100 Hb_000117_070--Hb_012368_100 Hb_000526_060 Hb_000526_060 Hb_000117_070--Hb_000526_060 Hb_044653_020 Hb_044653_020 Hb_000117_070--Hb_044653_020 Hb_120470_010 Hb_120470_010 Hb_000117_070--Hb_120470_010 Hb_000703_130 Hb_000703_130 Hb_000117_070--Hb_000703_130 Hb_000896_060--Hb_000526_060 Hb_014834_060 Hb_014834_060 Hb_000896_060--Hb_014834_060 Hb_000896_060--Hb_044653_020 Hb_000896_060--Hb_012368_100 Hb_000123_350 Hb_000123_350 Hb_000896_060--Hb_000123_350 Hb_012368_100--Hb_044653_020 Hb_002387_070 Hb_002387_070 Hb_012368_100--Hb_002387_070 Hb_004785_030 Hb_004785_030 Hb_012368_100--Hb_004785_030 Hb_012368_100--Hb_000703_130 Hb_007818_030 Hb_007818_030 Hb_000526_060--Hb_007818_030 Hb_000526_060--Hb_120470_010 Hb_155159_010 Hb_155159_010 Hb_000526_060--Hb_155159_010 Hb_000526_060--Hb_000703_130 Hb_044653_020--Hb_004785_030 Hb_005188_040 Hb_005188_040 Hb_044653_020--Hb_005188_040 Hb_044653_020--Hb_002387_070 Hb_011791_020 Hb_011791_020 Hb_120470_010--Hb_011791_020 Hb_120470_010--Hb_007818_030 Hb_002687_090 Hb_002687_090 Hb_120470_010--Hb_002687_090 Hb_004032_040 Hb_004032_040 Hb_120470_010--Hb_004032_040 Hb_000265_090 Hb_000265_090 Hb_000703_130--Hb_000265_090 Hb_000176_100 Hb_000176_100 Hb_000703_130--Hb_000176_100 Hb_000703_130--Hb_007818_030 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_000579_010 Hb_000579_010 Hb_000703_130--Hb_000579_010 Hb_000703_130--Hb_002687_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0912 74.9021 25.5438 23.0272 31.0373 29.2732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.02581 6.18154 14.723 32.6885 31.7744

CAGE analysis