Hb_004032_040

Information

Type -
Description -
Location Contig4032: 42218-47398
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011497mg
description hypothetical protein
nr
ID AFK37844.1
description unknown [Medicago truncatula]
swissprot
ID Q38953
description Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2
trembl
ID I3SC52
description Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Gene Ontology
ID GO:0005681
description probable pre-mrna-splicing factor atp-dependent rna helicase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39980: 42317-45849 , PASA_asmbl_39981: 43240-43530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_040 0.0 - - unknown [Medicago truncatula]
2 Hb_000703_200 0.085379559 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
3 Hb_012368_100 0.0877055513 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
4 Hb_000094_320 0.0893554724 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
5 Hb_120470_010 0.0933939128 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
6 Hb_000117_070 0.0943120359 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
7 Hb_000574_420 0.0951677488 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
8 Hb_052764_060 0.095795932 - - XPA-binding protein, putative [Ricinus communis]
9 Hb_000949_010 0.0962696441 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
10 Hb_000347_120 0.0968789655 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
11 Hb_023226_080 0.0983061274 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
12 Hb_000896_060 0.0988032168 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_006663_040 0.0989959908 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
14 Hb_003284_030 0.1000490348 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
15 Hb_000703_130 0.1002698099 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
16 Hb_000176_100 0.1007447849 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
17 Hb_007426_060 0.1009298876 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
18 Hb_007818_030 0.1015625449 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
19 Hb_000526_060 0.1016873517 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
20 Hb_000720_150 0.1030526942 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_040 Hb_004032_040 Hb_000703_200 Hb_000703_200 Hb_004032_040--Hb_000703_200 Hb_012368_100 Hb_012368_100 Hb_004032_040--Hb_012368_100 Hb_000094_320 Hb_000094_320 Hb_004032_040--Hb_000094_320 Hb_120470_010 Hb_120470_010 Hb_004032_040--Hb_120470_010 Hb_000117_070 Hb_000117_070 Hb_004032_040--Hb_000117_070 Hb_000574_420 Hb_000574_420 Hb_004032_040--Hb_000574_420 Hb_009302_030 Hb_009302_030 Hb_000703_200--Hb_009302_030 Hb_000024_040 Hb_000024_040 Hb_000703_200--Hb_000024_040 Hb_007426_060 Hb_007426_060 Hb_000703_200--Hb_007426_060 Hb_001545_150 Hb_001545_150 Hb_000703_200--Hb_001545_150 Hb_001723_010 Hb_001723_010 Hb_000703_200--Hb_001723_010 Hb_004517_020 Hb_004517_020 Hb_000703_200--Hb_004517_020 Hb_044653_020 Hb_044653_020 Hb_012368_100--Hb_044653_020 Hb_012368_100--Hb_000117_070 Hb_000896_060 Hb_000896_060 Hb_012368_100--Hb_000896_060 Hb_002387_070 Hb_002387_070 Hb_012368_100--Hb_002387_070 Hb_004785_030 Hb_004785_030 Hb_012368_100--Hb_004785_030 Hb_000703_130 Hb_000703_130 Hb_012368_100--Hb_000703_130 Hb_000347_120 Hb_000347_120 Hb_000094_320--Hb_000347_120 Hb_004371_010 Hb_004371_010 Hb_000094_320--Hb_004371_010 Hb_007193_110 Hb_007193_110 Hb_000094_320--Hb_007193_110 Hb_012114_050 Hb_012114_050 Hb_000094_320--Hb_012114_050 Hb_000526_060 Hb_000526_060 Hb_000094_320--Hb_000526_060 Hb_004410_070 Hb_004410_070 Hb_000094_320--Hb_004410_070 Hb_120470_010--Hb_000526_060 Hb_120470_010--Hb_000117_070 Hb_011791_020 Hb_011791_020 Hb_120470_010--Hb_011791_020 Hb_007818_030 Hb_007818_030 Hb_120470_010--Hb_007818_030 Hb_002687_090 Hb_002687_090 Hb_120470_010--Hb_002687_090 Hb_000117_070--Hb_000896_060 Hb_000117_070--Hb_000526_060 Hb_000117_070--Hb_044653_020 Hb_000117_070--Hb_000703_130 Hb_011161_020 Hb_011161_020 Hb_000574_420--Hb_011161_020 Hb_006185_060 Hb_006185_060 Hb_000574_420--Hb_006185_060 Hb_000574_420--Hb_012368_100 Hb_000574_420--Hb_000347_120 Hb_000941_030 Hb_000941_030 Hb_000574_420--Hb_000941_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1712 30.5592 10.5021 6.96328 13.6505 10.2686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.06081 4.06271 10.6522 17.2716 10.6856

CAGE analysis