Hb_000574_420

Information

Type -
Description -
Location Contig574: 360643-364359
Sequence    

Annotation

kegg
ID pop:POPTR_0001s20900g
description hypothetical protein
nr
ID XP_012073147.1
description PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
swissprot
ID Q9M2N5
description Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana GN=HAT PE=1 SV=1
trembl
ID U5GWD9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s20900g PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc finger bed domain-containing protein daysleeper-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49590: 359999-366672 , PASA_asmbl_49591: 359999-361908 , PASA_asmbl_49592: 364955-365143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_420 0.0 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
2 Hb_011161_020 0.0615920606 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
3 Hb_006185_060 0.0873841271 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
4 Hb_004032_040 0.0951677488 - - unknown [Medicago truncatula]
5 Hb_012368_100 0.1003664598 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
6 Hb_000347_120 0.1019130379 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
7 Hb_000941_030 0.1019989104 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
8 Hb_000703_200 0.1045883994 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
9 Hb_000373_100 0.1067625075 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
10 Hb_000120_660 0.1078339016 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
11 Hb_000896_060 0.1094039951 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000117_070 0.1101264949 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
13 Hb_006738_050 0.1102929284 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
14 Hb_000189_100 0.1109236304 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
15 Hb_009367_080 0.1117316805 transcription factor TF Family: WRKY WRKY transcription factor 42 [Jatropha curcas]
16 Hb_003047_020 0.1120641712 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
17 Hb_000137_020 0.113285642 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
18 Hb_000130_280 0.1153138918 - - PREDICTED: transcription factor GTE3, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_010417_070 0.1160151481 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
20 Hb_004785_030 0.1164262591 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_420 Hb_000574_420 Hb_011161_020 Hb_011161_020 Hb_000574_420--Hb_011161_020 Hb_006185_060 Hb_006185_060 Hb_000574_420--Hb_006185_060 Hb_004032_040 Hb_004032_040 Hb_000574_420--Hb_004032_040 Hb_012368_100 Hb_012368_100 Hb_000574_420--Hb_012368_100 Hb_000347_120 Hb_000347_120 Hb_000574_420--Hb_000347_120 Hb_000941_030 Hb_000941_030 Hb_000574_420--Hb_000941_030 Hb_011161_020--Hb_006185_060 Hb_003047_020 Hb_003047_020 Hb_011161_020--Hb_003047_020 Hb_009302_030 Hb_009302_030 Hb_011161_020--Hb_009302_030 Hb_004236_010 Hb_004236_010 Hb_011161_020--Hb_004236_010 Hb_000122_220 Hb_000122_220 Hb_011161_020--Hb_000122_220 Hb_000120_660 Hb_000120_660 Hb_006185_060--Hb_000120_660 Hb_006185_060--Hb_000122_220 Hb_002329_020 Hb_002329_020 Hb_006185_060--Hb_002329_020 Hb_000479_070 Hb_000479_070 Hb_006185_060--Hb_000479_070 Hb_000703_200 Hb_000703_200 Hb_004032_040--Hb_000703_200 Hb_004032_040--Hb_012368_100 Hb_000094_320 Hb_000094_320 Hb_004032_040--Hb_000094_320 Hb_120470_010 Hb_120470_010 Hb_004032_040--Hb_120470_010 Hb_000117_070 Hb_000117_070 Hb_004032_040--Hb_000117_070 Hb_044653_020 Hb_044653_020 Hb_012368_100--Hb_044653_020 Hb_012368_100--Hb_000117_070 Hb_000896_060 Hb_000896_060 Hb_012368_100--Hb_000896_060 Hb_002387_070 Hb_002387_070 Hb_012368_100--Hb_002387_070 Hb_004785_030 Hb_004785_030 Hb_012368_100--Hb_004785_030 Hb_000703_130 Hb_000703_130 Hb_012368_100--Hb_000703_130 Hb_000373_100 Hb_000373_100 Hb_000347_120--Hb_000373_100 Hb_005389_160 Hb_005389_160 Hb_000347_120--Hb_005389_160 Hb_010417_070 Hb_010417_070 Hb_000347_120--Hb_010417_070 Hb_004440_040 Hb_004440_040 Hb_000347_120--Hb_004440_040 Hb_000347_120--Hb_000094_320 Hb_004410_070 Hb_004410_070 Hb_000347_120--Hb_004410_070 Hb_001935_160 Hb_001935_160 Hb_000941_030--Hb_001935_160 Hb_004429_010 Hb_004429_010 Hb_000941_030--Hb_004429_010 Hb_001171_030 Hb_001171_030 Hb_000941_030--Hb_001171_030 Hb_000008_240 Hb_000008_240 Hb_000941_030--Hb_000008_240 Hb_000977_300 Hb_000977_300 Hb_000941_030--Hb_000977_300 Hb_004659_090 Hb_004659_090 Hb_000941_030--Hb_004659_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.6911 44.6739 15.4027 12.8599 12.7255 14.8905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.94165 3.86621 15.0485 17.3752 14.8223

CAGE analysis