Hb_004236_010

Information

Type -
Description -
Location Contig4236: 12281-30689
Sequence    

Annotation

kegg
ID rcu:RCOM_0525560
description mitochondrial processing peptidase beta subunit, putative (EC:3.4.24.64)
nr
ID XP_012084807.1
description PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
swissprot
ID Q42290
description Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=2 SV=2
trembl
ID A0A067K4S5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19924 PE=3 SV=1
Gene Ontology
ID GO:0004222
description insulinase (peptidase family m16) protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41879: 26315-26765 , PASA_asmbl_41880: 24096-37480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004236_010 0.0 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
2 Hb_000645_130 0.0772637731 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
3 Hb_009302_030 0.0776712132 - - hypothetical protein RCOM_1176340 [Ricinus communis]
4 Hb_000500_300 0.0778067937 - - PREDICTED: nucleolar protein 10 [Jatropha curcas]
5 Hb_004659_090 0.0797881424 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
6 Hb_000189_630 0.0800917419 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
7 Hb_007283_030 0.0866367386 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
8 Hb_000703_200 0.0896876222 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
9 Hb_007576_230 0.0897408662 - - hypothetical protein JCGZ_25616 [Jatropha curcas]
10 Hb_002968_070 0.0904977853 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
11 Hb_001534_210 0.090902509 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
12 Hb_011161_020 0.0910569798 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
13 Hb_005834_040 0.0920786079 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
14 Hb_002687_090 0.0923592217 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
15 Hb_003142_040 0.0943366763 - - Sf3a3 [Gossypium arboreum]
16 Hb_007576_220 0.0953982769 - - PREDICTED: kanadaptin [Jatropha curcas]
17 Hb_001221_090 0.0961355279 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
18 Hb_001171_030 0.0972296068 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
19 Hb_155159_010 0.0978054575 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
20 Hb_004032_230 0.0978125283 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]

Gene co-expression network

sample Hb_004236_010 Hb_004236_010 Hb_000645_130 Hb_000645_130 Hb_004236_010--Hb_000645_130 Hb_009302_030 Hb_009302_030 Hb_004236_010--Hb_009302_030 Hb_000500_300 Hb_000500_300 Hb_004236_010--Hb_000500_300 Hb_004659_090 Hb_004659_090 Hb_004236_010--Hb_004659_090 Hb_000189_630 Hb_000189_630 Hb_004236_010--Hb_000189_630 Hb_007283_030 Hb_007283_030 Hb_004236_010--Hb_007283_030 Hb_000645_130--Hb_009302_030 Hb_000958_050 Hb_000958_050 Hb_000645_130--Hb_000958_050 Hb_000645_130--Hb_004659_090 Hb_003939_060 Hb_003939_060 Hb_000645_130--Hb_003939_060 Hb_000645_130--Hb_000500_300 Hb_000806_030 Hb_000806_030 Hb_000645_130--Hb_000806_030 Hb_009302_030--Hb_003939_060 Hb_011249_060 Hb_011249_060 Hb_009302_030--Hb_011249_060 Hb_000703_200 Hb_000703_200 Hb_009302_030--Hb_000703_200 Hb_001534_210 Hb_001534_210 Hb_009302_030--Hb_001534_210 Hb_005834_040 Hb_005834_040 Hb_009302_030--Hb_005834_040 Hb_000500_300--Hb_001534_210 Hb_002056_100 Hb_002056_100 Hb_000500_300--Hb_002056_100 Hb_005523_020 Hb_005523_020 Hb_000500_300--Hb_005523_020 Hb_000445_060 Hb_000445_060 Hb_000500_300--Hb_000445_060 Hb_003849_140 Hb_003849_140 Hb_000500_300--Hb_003849_140 Hb_170077_010 Hb_170077_010 Hb_004659_090--Hb_170077_010 Hb_004659_090--Hb_000958_050 Hb_004659_090--Hb_000806_030 Hb_004659_090--Hb_009302_030 Hb_000110_350 Hb_000110_350 Hb_004659_090--Hb_000110_350 Hb_003142_040 Hb_003142_040 Hb_000189_630--Hb_003142_040 Hb_001171_030 Hb_001171_030 Hb_000189_630--Hb_001171_030 Hb_000977_300 Hb_000977_300 Hb_000189_630--Hb_000977_300 Hb_004517_020 Hb_004517_020 Hb_000189_630--Hb_004517_020 Hb_005333_140 Hb_005333_140 Hb_000189_630--Hb_005333_140 Hb_000189_630--Hb_005834_040 Hb_007818_040 Hb_007818_040 Hb_007283_030--Hb_007818_040 Hb_155159_010 Hb_155159_010 Hb_007283_030--Hb_155159_010 Hb_011202_030 Hb_011202_030 Hb_007283_030--Hb_011202_030 Hb_000086_050 Hb_000086_050 Hb_007283_030--Hb_000086_050 Hb_007576_230 Hb_007576_230 Hb_007283_030--Hb_007576_230 Hb_000377_050 Hb_000377_050 Hb_007283_030--Hb_000377_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3761 21.4927 15.118 6.84284 10.3074 6.77939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.86592 3.9232 7.43397 12.4084 11.7981

CAGE analysis