Hb_000122_220

Information

Type -
Description -
Location Contig122: 176185-176826
Sequence    

Annotation

kegg
ID rcu:RCOM_0687680
description Prenylated Rab acceptor protein, putative
nr
ID XP_002520799.1
description Prenylated Rab acceptor protein, putative [Ricinus communis]
swissprot
ID O80915
description PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1
trembl
ID B9S480
description Prenylated Rab acceptor protein, putative OS=Ricinus communis GN=RCOM_0687680 PE=4 SV=1
Gene Ontology
ID GO:0005783
description pra1 family protein b3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06670: 175833-176719
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_220 0.0 - - Prenylated Rab acceptor protein, putative [Ricinus communis]
2 Hb_000358_200 0.0699556107 - - PREDICTED: uncharacterized protein LOC105637771 [Jatropha curcas]
3 Hb_004659_090 0.0850579902 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
4 Hb_006185_060 0.0869651841 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
5 Hb_011161_020 0.0912887011 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
6 Hb_001231_090 0.0939629086 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
7 Hb_002687_090 0.1013186433 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
8 Hb_000806_030 0.1019992865 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
9 Hb_003470_030 0.1023745931 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
10 Hb_002329_020 0.1028726254 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
11 Hb_009302_030 0.102929469 - - hypothetical protein RCOM_1176340 [Ricinus communis]
12 Hb_023226_070 0.1035311936 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002282_060 0.1037457898 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
14 Hb_002056_100 0.1057999218 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
15 Hb_001454_220 0.1058933984 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
16 Hb_003918_030 0.1072024309 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
17 Hb_147505_010 0.1074881264 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
18 Hb_000265_090 0.1085497374 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
19 Hb_044653_020 0.1089344498 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
20 Hb_001301_130 0.1100743735 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]

Gene co-expression network

sample Hb_000122_220 Hb_000122_220 Hb_000358_200 Hb_000358_200 Hb_000122_220--Hb_000358_200 Hb_004659_090 Hb_004659_090 Hb_000122_220--Hb_004659_090 Hb_006185_060 Hb_006185_060 Hb_000122_220--Hb_006185_060 Hb_011161_020 Hb_011161_020 Hb_000122_220--Hb_011161_020 Hb_001231_090 Hb_001231_090 Hb_000122_220--Hb_001231_090 Hb_002687_090 Hb_002687_090 Hb_000122_220--Hb_002687_090 Hb_001488_270 Hb_001488_270 Hb_000358_200--Hb_001488_270 Hb_003895_020 Hb_003895_020 Hb_000358_200--Hb_003895_020 Hb_044653_020 Hb_044653_020 Hb_000358_200--Hb_044653_020 Hb_005649_080 Hb_005649_080 Hb_000358_200--Hb_005649_080 Hb_000358_200--Hb_004659_090 Hb_000645_130 Hb_000645_130 Hb_004659_090--Hb_000645_130 Hb_170077_010 Hb_170077_010 Hb_004659_090--Hb_170077_010 Hb_000958_050 Hb_000958_050 Hb_004659_090--Hb_000958_050 Hb_000806_030 Hb_000806_030 Hb_004659_090--Hb_000806_030 Hb_009302_030 Hb_009302_030 Hb_004659_090--Hb_009302_030 Hb_000110_350 Hb_000110_350 Hb_004659_090--Hb_000110_350 Hb_006185_060--Hb_011161_020 Hb_000120_660 Hb_000120_660 Hb_006185_060--Hb_000120_660 Hb_000574_420 Hb_000574_420 Hb_006185_060--Hb_000574_420 Hb_002329_020 Hb_002329_020 Hb_006185_060--Hb_002329_020 Hb_000479_070 Hb_000479_070 Hb_006185_060--Hb_000479_070 Hb_011161_020--Hb_000574_420 Hb_003047_020 Hb_003047_020 Hb_011161_020--Hb_003047_020 Hb_011161_020--Hb_009302_030 Hb_004236_010 Hb_004236_010 Hb_011161_020--Hb_004236_010 Hb_002542_130 Hb_002542_130 Hb_001231_090--Hb_002542_130 Hb_002282_060 Hb_002282_060 Hb_001231_090--Hb_002282_060 Hb_004976_010 Hb_004976_010 Hb_001231_090--Hb_004976_010 Hb_001534_210 Hb_001534_210 Hb_001231_090--Hb_001534_210 Hb_004032_230 Hb_004032_230 Hb_001231_090--Hb_004032_230 Hb_005523_020 Hb_005523_020 Hb_001231_090--Hb_005523_020 Hb_013405_160 Hb_013405_160 Hb_002687_090--Hb_013405_160 Hb_000703_130 Hb_000703_130 Hb_002687_090--Hb_000703_130 Hb_007818_030 Hb_007818_030 Hb_002687_090--Hb_007818_030 Hb_000086_050 Hb_000086_050 Hb_002687_090--Hb_000086_050 Hb_000579_010 Hb_000579_010 Hb_002687_090--Hb_000579_010 Hb_007283_030 Hb_007283_030 Hb_002687_090--Hb_007283_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.5706 89.6584 50.7207 37.5192 44.9427 33.0543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5464 13.4417 29.4431 19.9991 52.8426

CAGE analysis