Hb_001488_270

Information

Type -
Description -
Location Contig1488: 171047-174478
Sequence    

Annotation

kegg
ID rcu:RCOM_1025310
description hypothetical protein
nr
ID XP_012084828.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
swissprot
ID Q9S7I6
description LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=2 SV=1
trembl
ID A0A067JTQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19946 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lrr receptor-like serine threonine-protein kinase rpk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_270 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
2 Hb_000176_130 0.0852671244 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
3 Hb_000197_290 0.0867542777 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
4 Hb_000265_090 0.0875138674 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
5 Hb_000358_200 0.0900202344 - - PREDICTED: uncharacterized protein LOC105637771 [Jatropha curcas]
6 Hb_007813_030 0.0913963197 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
7 Hb_002027_280 0.0970102763 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
8 Hb_000979_240 0.09709678 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
9 Hb_003805_040 0.0981508912 - - Sacsin [Glycine soja]
10 Hb_000836_020 0.0987324827 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
11 Hb_000334_130 0.0989223305 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
12 Hb_000703_130 0.0990975725 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
13 Hb_003120_070 0.0998427111 - - ATP binding protein, putative [Ricinus communis]
14 Hb_001989_050 0.1016652196 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
15 Hb_011242_060 0.1030323734 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
16 Hb_000117_070 0.1039416239 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
17 Hb_000896_060 0.1040392258 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000751_140 0.1041108642 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
19 Hb_003124_160 0.1054914918 - - dynamin, putative [Ricinus communis]
20 Hb_004429_010 0.1071716141 - - calcineurin-like phosphoesterase [Manihot esculenta]

Gene co-expression network

sample Hb_001488_270 Hb_001488_270 Hb_000176_130 Hb_000176_130 Hb_001488_270--Hb_000176_130 Hb_000197_290 Hb_000197_290 Hb_001488_270--Hb_000197_290 Hb_000265_090 Hb_000265_090 Hb_001488_270--Hb_000265_090 Hb_000358_200 Hb_000358_200 Hb_001488_270--Hb_000358_200 Hb_007813_030 Hb_007813_030 Hb_001488_270--Hb_007813_030 Hb_002027_280 Hb_002027_280 Hb_001488_270--Hb_002027_280 Hb_003124_160 Hb_003124_160 Hb_000176_130--Hb_003124_160 Hb_001235_230 Hb_001235_230 Hb_000176_130--Hb_001235_230 Hb_011202_020 Hb_011202_020 Hb_000176_130--Hb_011202_020 Hb_000261_030 Hb_000261_030 Hb_000176_130--Hb_000261_030 Hb_002044_170 Hb_002044_170 Hb_000176_130--Hb_002044_170 Hb_001401_060 Hb_001401_060 Hb_000176_130--Hb_001401_060 Hb_000197_290--Hb_007813_030 Hb_000574_510 Hb_000574_510 Hb_000197_290--Hb_000574_510 Hb_000062_470 Hb_000062_470 Hb_000197_290--Hb_000062_470 Hb_003604_040 Hb_003604_040 Hb_000197_290--Hb_003604_040 Hb_003120_070 Hb_003120_070 Hb_000197_290--Hb_003120_070 Hb_000703_130 Hb_000703_130 Hb_000265_090--Hb_000703_130 Hb_011242_060 Hb_011242_060 Hb_000265_090--Hb_011242_060 Hb_000665_230 Hb_000665_230 Hb_000265_090--Hb_000665_230 Hb_005188_040 Hb_005188_040 Hb_000265_090--Hb_005188_040 Hb_010712_040 Hb_010712_040 Hb_000265_090--Hb_010712_040 Hb_000836_020 Hb_000836_020 Hb_000265_090--Hb_000836_020 Hb_000122_220 Hb_000122_220 Hb_000358_200--Hb_000122_220 Hb_003895_020 Hb_003895_020 Hb_000358_200--Hb_003895_020 Hb_044653_020 Hb_044653_020 Hb_000358_200--Hb_044653_020 Hb_005649_080 Hb_005649_080 Hb_000358_200--Hb_005649_080 Hb_004659_090 Hb_004659_090 Hb_000358_200--Hb_004659_090 Hb_000661_200 Hb_000661_200 Hb_007813_030--Hb_000661_200 Hb_007813_030--Hb_000062_470 Hb_007813_030--Hb_000574_510 Hb_052764_060 Hb_052764_060 Hb_007813_030--Hb_052764_060 Hb_005104_010 Hb_005104_010 Hb_007813_030--Hb_005104_010 Hb_004429_010 Hb_004429_010 Hb_002027_280--Hb_004429_010 Hb_002027_280--Hb_003124_160 Hb_001904_030 Hb_001904_030 Hb_002027_280--Hb_001904_030 Hb_001673_050 Hb_001673_050 Hb_002027_280--Hb_001673_050 Hb_001277_300 Hb_001277_300 Hb_002027_280--Hb_001277_300 Hb_000352_070 Hb_000352_070 Hb_002027_280--Hb_000352_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.1793 16.7267 5.28148 8.83082 8.67413 9.08218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45272 1.76189 3.51025 5.28041 10.1815

CAGE analysis