Hb_003604_040

Information

Type -
Description -
Location Contig3604: 53999-66940
Sequence    

Annotation

kegg
ID sot:102601066
description uncharacterized LOC102601066
nr
ID XP_010112288.1
description Serine/threonine-protein kinase sepA [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9SKM1
description Serine/threonine-protein kinase sepA OS=Morus notabilis GN=L484_014970 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase sepa-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37117: 46640-96499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003604_040 0.0 - - Serine/threonine-protein kinase sepA [Morus notabilis]
2 Hb_000574_510 0.084892427 - - protein kinase, putative [Ricinus communis]
3 Hb_000949_010 0.0863713111 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
4 Hb_003604_030 0.0873418659 - - hypothetical protein MIMGU_mgv1a025764mg, partial [Erythranthe guttata]
5 Hb_000117_070 0.0917849072 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
6 Hb_011671_230 0.0924169142 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000046_180 0.0948596918 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
8 Hb_000197_290 0.0952706826 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
9 Hb_011947_050 0.0955445387 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
10 Hb_000176_130 0.1023601747 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
11 Hb_174865_020 0.106489129 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
12 Hb_001989_050 0.1071672676 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
13 Hb_001488_270 0.1077719745 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
14 Hb_000836_020 0.1083173161 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
15 Hb_003120_070 0.1107067641 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000896_060 0.1114534953 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_007576_210 0.1115881679 - - PREDICTED: protein furry homolog [Jatropha curcas]
18 Hb_005214_150 0.1116550737 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
19 Hb_001401_060 0.1132606616 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
20 Hb_011828_030 0.1147549015 - - ubiquitin protein ligase E3a, putative [Ricinus communis]

Gene co-expression network

sample Hb_003604_040 Hb_003604_040 Hb_000574_510 Hb_000574_510 Hb_003604_040--Hb_000574_510 Hb_000949_010 Hb_000949_010 Hb_003604_040--Hb_000949_010 Hb_003604_030 Hb_003604_030 Hb_003604_040--Hb_003604_030 Hb_000117_070 Hb_000117_070 Hb_003604_040--Hb_000117_070 Hb_011671_230 Hb_011671_230 Hb_003604_040--Hb_011671_230 Hb_000046_180 Hb_000046_180 Hb_003604_040--Hb_000046_180 Hb_000544_060 Hb_000544_060 Hb_000574_510--Hb_000544_060 Hb_007813_030 Hb_007813_030 Hb_000574_510--Hb_007813_030 Hb_000661_200 Hb_000661_200 Hb_000574_510--Hb_000661_200 Hb_000197_290 Hb_000197_290 Hb_000574_510--Hb_000197_290 Hb_000574_510--Hb_011671_230 Hb_003284_030 Hb_003284_030 Hb_000949_010--Hb_003284_030 Hb_011947_050 Hb_011947_050 Hb_000949_010--Hb_011947_050 Hb_000176_100 Hb_000176_100 Hb_000949_010--Hb_000176_100 Hb_003581_170 Hb_003581_170 Hb_000949_010--Hb_003581_170 Hb_001959_020 Hb_001959_020 Hb_000949_010--Hb_001959_020 Hb_174865_020 Hb_174865_020 Hb_000949_010--Hb_174865_020 Hb_000162_020 Hb_000162_020 Hb_003604_030--Hb_000162_020 Hb_001401_060 Hb_001401_060 Hb_003604_030--Hb_001401_060 Hb_003604_030--Hb_011947_050 Hb_001117_160 Hb_001117_160 Hb_003604_030--Hb_001117_160 Hb_003604_030--Hb_174865_020 Hb_000896_060 Hb_000896_060 Hb_000117_070--Hb_000896_060 Hb_012368_100 Hb_012368_100 Hb_000117_070--Hb_012368_100 Hb_000526_060 Hb_000526_060 Hb_000117_070--Hb_000526_060 Hb_044653_020 Hb_044653_020 Hb_000117_070--Hb_044653_020 Hb_120470_010 Hb_120470_010 Hb_000117_070--Hb_120470_010 Hb_000703_130 Hb_000703_130 Hb_000117_070--Hb_000703_130 Hb_005214_150 Hb_005214_150 Hb_011671_230--Hb_005214_150 Hb_011671_230--Hb_000949_010 Hb_000768_180 Hb_000768_180 Hb_011671_230--Hb_000768_180 Hb_000176_130 Hb_000176_130 Hb_011671_230--Hb_000176_130 Hb_002784_010 Hb_002784_010 Hb_011671_230--Hb_002784_010 Hb_000046_180--Hb_003284_030 Hb_000046_180--Hb_000949_010 Hb_000046_180--Hb_001401_060 Hb_000046_180--Hb_174865_020 Hb_000046_180--Hb_011947_050 Hb_002044_170 Hb_002044_170 Hb_000046_180--Hb_002044_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.4862 24.927 6.25768 9.65931 15.6912 15.4895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.79642 1.66855 4.8986 12.0057 11.5917

CAGE analysis