Hb_000046_180

Information

Type -
Description -
Location Contig46: 132057-137784
Sequence    

Annotation

kegg
ID rcu:RCOM_0679460
description pax transcription activation domain interacting protein, putative
nr
ID XP_012069425.1
description PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02034 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43619: 132148-133172 , PASA_asmbl_43620: 133871-134101 , PASA_asmbl_43622: 135399-136901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_180 0.0 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
2 Hb_003284_030 0.080576033 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
3 Hb_000949_010 0.0825138284 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
4 Hb_001401_060 0.0880256994 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
5 Hb_174865_020 0.0887052286 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
6 Hb_011947_050 0.0902637253 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
7 Hb_002044_170 0.0902735173 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
8 Hb_007576_210 0.0903963325 - - PREDICTED: protein furry homolog [Jatropha curcas]
9 Hb_000176_130 0.0911378927 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
10 Hb_001235_230 0.0942102997 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
11 Hb_003604_040 0.0948596918 - - Serine/threonine-protein kinase sepA [Morus notabilis]
12 Hb_011671_230 0.0964270512 - - conserved hypothetical protein [Ricinus communis]
13 Hb_030627_060 0.0975729561 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
14 Hb_003913_110 0.0986483227 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
15 Hb_011202_020 0.1020940824 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
16 Hb_118840_030 0.1021779443 - - PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Jatropha curcas]
17 Hb_001959_020 0.1026371245 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
18 Hb_178968_050 0.1034952755 - - PREDICTED: probable serine incorporator [Jatropha curcas]
19 Hb_001575_010 0.103743573 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000069_410 0.1055395991 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000046_180 Hb_000046_180 Hb_003284_030 Hb_003284_030 Hb_000046_180--Hb_003284_030 Hb_000949_010 Hb_000949_010 Hb_000046_180--Hb_000949_010 Hb_001401_060 Hb_001401_060 Hb_000046_180--Hb_001401_060 Hb_174865_020 Hb_174865_020 Hb_000046_180--Hb_174865_020 Hb_011947_050 Hb_011947_050 Hb_000046_180--Hb_011947_050 Hb_002044_170 Hb_002044_170 Hb_000046_180--Hb_002044_170 Hb_003284_030--Hb_000949_010 Hb_004884_150 Hb_004884_150 Hb_003284_030--Hb_004884_150 Hb_003284_030--Hb_174865_020 Hb_000176_100 Hb_000176_100 Hb_003284_030--Hb_000176_100 Hb_001235_230 Hb_001235_230 Hb_003284_030--Hb_001235_230 Hb_018133_050 Hb_018133_050 Hb_003284_030--Hb_018133_050 Hb_000949_010--Hb_011947_050 Hb_000949_010--Hb_000176_100 Hb_003581_170 Hb_003581_170 Hb_000949_010--Hb_003581_170 Hb_001959_020 Hb_001959_020 Hb_000949_010--Hb_001959_020 Hb_000949_010--Hb_174865_020 Hb_000176_130 Hb_000176_130 Hb_001401_060--Hb_000176_130 Hb_000086_690 Hb_000086_690 Hb_001401_060--Hb_000086_690 Hb_001401_060--Hb_001235_230 Hb_001401_060--Hb_002044_170 Hb_001440_040 Hb_001440_040 Hb_001401_060--Hb_001440_040 Hb_000406_020 Hb_000406_020 Hb_001401_060--Hb_000406_020 Hb_174865_020--Hb_011947_050 Hb_003211_040 Hb_003211_040 Hb_174865_020--Hb_003211_040 Hb_000174_290 Hb_000174_290 Hb_174865_020--Hb_000174_290 Hb_174865_020--Hb_018133_050 Hb_011947_050--Hb_003284_030 Hb_011947_050--Hb_003211_040 Hb_007576_210 Hb_007576_210 Hb_011947_050--Hb_007576_210 Hb_002333_050 Hb_002333_050 Hb_011947_050--Hb_002333_050 Hb_002044_170--Hb_001235_230 Hb_030627_060 Hb_030627_060 Hb_002044_170--Hb_030627_060 Hb_032920_130 Hb_032920_130 Hb_002044_170--Hb_032920_130 Hb_000261_030 Hb_000261_030 Hb_002044_170--Hb_000261_030 Hb_002044_170--Hb_000176_130 Hb_000035_410 Hb_000035_410 Hb_002044_170--Hb_000035_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.2568 7.13638 1.94804 3.87032 6.89243 4.89111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36811 0.924124 2.42816 6.12063 3.97723

CAGE analysis