Hb_174865_020

Information

Type -
Description -
Location Contig174865: 15243-30852
Sequence    

Annotation

kegg
ID rcu:RCOM_0482820
description E3 ubiquitin protein ligase upl2, putative
nr
ID XP_002527362.1
description E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
swissprot
ID Q8H0T4
description E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=3
trembl
ID B9SMZ3
description E3 ubiquitin protein ligase upl2, putative OS=Ricinus communis GN=RCOM_0482820 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase upl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16639: 15489-30851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174865_020 0.0 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
2 Hb_011947_050 0.0392970863 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
3 Hb_000949_010 0.0652652378 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
4 Hb_003284_030 0.0669294308 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
5 Hb_003211_040 0.076593191 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
6 Hb_000174_290 0.0801024683 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
7 Hb_018133_050 0.0812969926 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
8 Hb_005656_040 0.0849099309 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_011828_030 0.0873762077 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
10 Hb_000046_180 0.0887052286 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
11 Hb_001959_020 0.090921288 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
12 Hb_003581_170 0.0920425969 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
13 Hb_007576_210 0.0936215922 - - PREDICTED: protein furry homolog [Jatropha curcas]
14 Hb_000176_100 0.0940768878 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
15 Hb_000260_070 0.0943221713 - - kinase, putative [Ricinus communis]
16 Hb_002333_050 0.0949906118 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
17 Hb_000069_410 0.0952285378 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
18 Hb_001699_280 0.0956961789 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
19 Hb_000321_150 0.0957460145 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
20 Hb_002909_120 0.0986386296 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]

Gene co-expression network

sample Hb_174865_020 Hb_174865_020 Hb_011947_050 Hb_011947_050 Hb_174865_020--Hb_011947_050 Hb_000949_010 Hb_000949_010 Hb_174865_020--Hb_000949_010 Hb_003284_030 Hb_003284_030 Hb_174865_020--Hb_003284_030 Hb_003211_040 Hb_003211_040 Hb_174865_020--Hb_003211_040 Hb_000174_290 Hb_000174_290 Hb_174865_020--Hb_000174_290 Hb_018133_050 Hb_018133_050 Hb_174865_020--Hb_018133_050 Hb_011947_050--Hb_000949_010 Hb_011947_050--Hb_003284_030 Hb_011947_050--Hb_003211_040 Hb_007576_210 Hb_007576_210 Hb_011947_050--Hb_007576_210 Hb_002333_050 Hb_002333_050 Hb_011947_050--Hb_002333_050 Hb_000949_010--Hb_003284_030 Hb_000176_100 Hb_000176_100 Hb_000949_010--Hb_000176_100 Hb_003581_170 Hb_003581_170 Hb_000949_010--Hb_003581_170 Hb_001959_020 Hb_001959_020 Hb_000949_010--Hb_001959_020 Hb_004884_150 Hb_004884_150 Hb_003284_030--Hb_004884_150 Hb_003284_030--Hb_000176_100 Hb_001235_230 Hb_001235_230 Hb_003284_030--Hb_001235_230 Hb_003284_030--Hb_018133_050 Hb_003211_040--Hb_007576_210 Hb_002095_070 Hb_002095_070 Hb_003211_040--Hb_002095_070 Hb_003119_080 Hb_003119_080 Hb_003211_040--Hb_003119_080 Hb_002909_120 Hb_002909_120 Hb_003211_040--Hb_002909_120 Hb_009486_170 Hb_009486_170 Hb_003211_040--Hb_009486_170 Hb_003729_030 Hb_003729_030 Hb_000174_290--Hb_003729_030 Hb_000174_290--Hb_001235_230 Hb_004410_120 Hb_004410_120 Hb_000174_290--Hb_004410_120 Hb_000005_070 Hb_000005_070 Hb_000174_290--Hb_000005_070 Hb_019430_020 Hb_019430_020 Hb_000174_290--Hb_019430_020 Hb_001322_130 Hb_001322_130 Hb_000174_290--Hb_001322_130 Hb_157966_010 Hb_157966_010 Hb_018133_050--Hb_157966_010 Hb_000832_320 Hb_000832_320 Hb_018133_050--Hb_000832_320 Hb_006663_040 Hb_006663_040 Hb_018133_050--Hb_006663_040 Hb_052764_060 Hb_052764_060 Hb_018133_050--Hb_052764_060 Hb_000959_040 Hb_000959_040 Hb_018133_050--Hb_000959_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1876 46.6897 7.95746 17.5124 31.5773 26.2414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.27124 8.19435 18.6201 26.3476 24.6254

CAGE analysis