Hb_001440_040

Information

Type -
Description -
Location Contig1440: 82697-87435
Sequence    

Annotation

kegg
ID atr:s00058p00039730
description AMTR_s00058p00039730; hypothetical protein
nr
ID XP_006379534.1
description hypothetical protein POPTR_0008s03520g [Populus trichocarpa]
swissprot
ID O35382
description Exocyst complex component 4 OS=Mus musculus GN=Exoc4 PE=1 SV=2
trembl
ID U5G4Z5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s03520g PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component sec8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11645: 83368-86261 , PASA_asmbl_11646: 87404-88910
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001440_040 0.0 - - hypothetical protein POPTR_0008s03520g [Populus trichocarpa]
2 Hb_001235_230 0.0811861377 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
3 Hb_001401_060 0.0824873948 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
4 Hb_032920_130 0.0901498133 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
5 Hb_005488_150 0.0921606825 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_002044_170 0.0928424037 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
7 Hb_000069_320 0.0953804553 - - PREDICTED: uncharacterized protein LOC105642846 [Jatropha curcas]
8 Hb_000343_110 0.0984798344 - - Heat shock 70 kDa protein, putative [Ricinus communis]
9 Hb_000406_020 0.0990333525 - - -
10 Hb_003284_030 0.1007823491 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
11 Hb_148909_030 0.1018743974 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
12 Hb_011202_020 0.1029632177 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
13 Hb_030627_060 0.1043332723 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
14 Hb_002641_130 0.1070576078 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
15 Hb_000853_210 0.1073938674 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
16 Hb_158604_010 0.107878026 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
17 Hb_002233_100 0.1089434671 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]
18 Hb_004117_100 0.1092644905 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
19 Hb_000261_030 0.1094610648 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
20 Hb_000035_410 0.1094713191 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]

Gene co-expression network

sample Hb_001440_040 Hb_001440_040 Hb_001235_230 Hb_001235_230 Hb_001440_040--Hb_001235_230 Hb_001401_060 Hb_001401_060 Hb_001440_040--Hb_001401_060 Hb_032920_130 Hb_032920_130 Hb_001440_040--Hb_032920_130 Hb_005488_150 Hb_005488_150 Hb_001440_040--Hb_005488_150 Hb_002044_170 Hb_002044_170 Hb_001440_040--Hb_002044_170 Hb_000069_320 Hb_000069_320 Hb_001440_040--Hb_000069_320 Hb_011202_020 Hb_011202_020 Hb_001235_230--Hb_011202_020 Hb_000261_030 Hb_000261_030 Hb_001235_230--Hb_000261_030 Hb_000176_130 Hb_000176_130 Hb_001235_230--Hb_000176_130 Hb_001235_230--Hb_002044_170 Hb_005357_260 Hb_005357_260 Hb_001235_230--Hb_005357_260 Hb_000035_410 Hb_000035_410 Hb_001235_230--Hb_000035_410 Hb_001401_060--Hb_000176_130 Hb_000086_690 Hb_000086_690 Hb_001401_060--Hb_000086_690 Hb_001401_060--Hb_001235_230 Hb_001401_060--Hb_002044_170 Hb_000406_020 Hb_000406_020 Hb_001401_060--Hb_000406_020 Hb_010417_060 Hb_010417_060 Hb_032920_130--Hb_010417_060 Hb_032920_130--Hb_000261_030 Hb_032920_130--Hb_002044_170 Hb_032920_130--Hb_000035_410 Hb_006787_060 Hb_006787_060 Hb_032920_130--Hb_006787_060 Hb_032920_130--Hb_001235_230 Hb_148909_030 Hb_148909_030 Hb_005488_150--Hb_148909_030 Hb_000183_020 Hb_000183_020 Hb_005488_150--Hb_000183_020 Hb_005488_150--Hb_000069_320 Hb_004453_110 Hb_004453_110 Hb_005488_150--Hb_004453_110 Hb_009503_030 Hb_009503_030 Hb_005488_150--Hb_009503_030 Hb_000429_220 Hb_000429_220 Hb_005488_150--Hb_000429_220 Hb_030627_060 Hb_030627_060 Hb_002044_170--Hb_030627_060 Hb_002044_170--Hb_000261_030 Hb_002044_170--Hb_000176_130 Hb_002044_170--Hb_000035_410 Hb_000041_090 Hb_000041_090 Hb_000069_320--Hb_000041_090 Hb_000069_320--Hb_148909_030 Hb_000069_320--Hb_000406_020 Hb_006295_020 Hb_006295_020 Hb_000069_320--Hb_006295_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4155 19.993 11.58 11.3862 28.1679 19.881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.81302 4.08382 14.8946 15.3477 19.9625

CAGE analysis