Hb_006295_020

Information

Type -
Description -
Location Contig6295: 17400-42279
Sequence    

Annotation

kegg
ID rcu:RCOM_0975960
description Serine/threonine-protein kinase ATR, putative (EC:2.7.11.1)
nr
ID XP_012077694.1
description PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
swissprot
ID Q9FKS4
description Serine/threonine-protein kinase ATR OS=Arabidopsis thaliana GN=ATR PE=2 SV=2
trembl
ID B9S5G9
description Serine/threonine-protein kinase ATR, putative OS=Ricinus communis GN=RCOM_0975960 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase atr isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51786: 18133-19502 , PASA_asmbl_51787: 19715-21849 , PASA_asmbl_51791: 23375-23629 , PASA_asmbl_51794: 25395-25524 , PASA_asmbl_51796: 36019-40883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006295_020 0.0 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
2 Hb_005348_010 0.0703171118 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000083_070 0.0777089289 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
4 Hb_000329_750 0.0780526614 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
5 Hb_000041_090 0.0802883218 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
6 Hb_000265_230 0.0802990437 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
7 Hb_003203_030 0.0862943555 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
8 Hb_000406_020 0.0863403794 - - -
9 Hb_003805_050 0.0872061086 - - -
10 Hb_000788_070 0.0882419409 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
11 Hb_000815_170 0.0890336798 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
12 Hb_018118_010 0.0908159601 - - DNA polymerase I, putative [Ricinus communis]
13 Hb_000300_120 0.0908174288 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
14 Hb_002909_120 0.0911250865 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
15 Hb_000331_560 0.0928735469 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
16 Hb_156279_010 0.0928793328 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
17 Hb_003119_080 0.0930019373 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
18 Hb_003506_050 0.0930481859 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000069_320 0.0945974631 - - PREDICTED: uncharacterized protein LOC105642846 [Jatropha curcas]
20 Hb_000714_040 0.094791708 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006295_020 Hb_006295_020 Hb_005348_010 Hb_005348_010 Hb_006295_020--Hb_005348_010 Hb_000083_070 Hb_000083_070 Hb_006295_020--Hb_000083_070 Hb_000329_750 Hb_000329_750 Hb_006295_020--Hb_000329_750 Hb_000041_090 Hb_000041_090 Hb_006295_020--Hb_000041_090 Hb_000265_230 Hb_000265_230 Hb_006295_020--Hb_000265_230 Hb_003203_030 Hb_003203_030 Hb_006295_020--Hb_003203_030 Hb_005348_010--Hb_000329_750 Hb_003805_050 Hb_003805_050 Hb_005348_010--Hb_003805_050 Hb_005348_010--Hb_003203_030 Hb_005488_170 Hb_005488_170 Hb_005348_010--Hb_005488_170 Hb_002909_120 Hb_002909_120 Hb_005348_010--Hb_002909_120 Hb_001133_030 Hb_001133_030 Hb_000083_070--Hb_001133_030 Hb_000925_090 Hb_000925_090 Hb_000083_070--Hb_000925_090 Hb_000083_070--Hb_003805_050 Hb_000261_150 Hb_000261_150 Hb_000083_070--Hb_000261_150 Hb_000025_710 Hb_000025_710 Hb_000083_070--Hb_000025_710 Hb_012244_020 Hb_012244_020 Hb_000083_070--Hb_012244_020 Hb_000329_750--Hb_003805_050 Hb_000329_750--Hb_005488_170 Hb_000329_750--Hb_003203_030 Hb_000329_750--Hb_002909_120 Hb_002233_100 Hb_002233_100 Hb_000041_090--Hb_002233_100 Hb_006816_430 Hb_006816_430 Hb_000041_090--Hb_006816_430 Hb_000300_120 Hb_000300_120 Hb_000041_090--Hb_000300_120 Hb_000041_090--Hb_003203_030 Hb_003440_050 Hb_003440_050 Hb_000041_090--Hb_003440_050 Hb_000788_070 Hb_000788_070 Hb_000265_230--Hb_000788_070 Hb_018118_010 Hb_018118_010 Hb_000265_230--Hb_018118_010 Hb_000265_230--Hb_006816_430 Hb_001191_120 Hb_001191_120 Hb_000265_230--Hb_001191_120 Hb_000265_230--Hb_000025_710 Hb_000265_230--Hb_003203_030 Hb_000331_560 Hb_000331_560 Hb_003203_030--Hb_000331_560 Hb_003203_030--Hb_018118_010 Hb_003203_030--Hb_006816_430 Hb_001862_180 Hb_001862_180 Hb_003203_030--Hb_001862_180 Hb_001259_020 Hb_001259_020 Hb_003203_030--Hb_001259_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.46081 4.22022 1.61322 1.30863 3.24235 4.4125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28271 1.51817 2.36868 3.10942 5.63004

CAGE analysis