Hb_001862_180

Information

Type -
Description -
Location Contig1862: 216270-218156
Sequence    

Annotation

kegg
ID pop:POPTR_0007s10370g
description hypothetical protein
nr
ID XP_012079333.1
description PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Jatropha curcas]
swissprot
ID Q9SZT8
description Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana GN=ELI1 PE=3 SV=1
trembl
ID A0A067KJK6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12480 PE=4 SV=1
Gene Ontology
ID GO:0009062
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18308: 217069-217198 , PASA_asmbl_18309: 217205-217529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_180 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Jatropha curcas]
2 Hb_003203_030 0.0768732064 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
3 Hb_001205_230 0.0775166117 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
4 Hb_003910_060 0.0779990534 - - PREDICTED: pentatricopeptide repeat-containing protein At4g37170 [Jatropha curcas]
5 Hb_000803_260 0.0785635692 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
6 Hb_000388_090 0.0863753633 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
7 Hb_001329_140 0.0869763487 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
8 Hb_000684_250 0.0887458598 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
9 Hb_009767_080 0.0897814825 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
10 Hb_000265_230 0.0918066436 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
11 Hb_003168_110 0.0918954478 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
12 Hb_000007_450 0.0927332339 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
13 Hb_001004_060 0.0942760627 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
14 Hb_005348_010 0.0953356541 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000672_040 0.0959921729 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
16 Hb_004676_010 0.0964742292 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
17 Hb_001498_010 0.097493966 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
18 Hb_009270_020 0.0975479777 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
19 Hb_004182_050 0.0980658913 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
20 Hb_000318_390 0.0980888669 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001862_180 Hb_001862_180 Hb_003203_030 Hb_003203_030 Hb_001862_180--Hb_003203_030 Hb_001205_230 Hb_001205_230 Hb_001862_180--Hb_001205_230 Hb_003910_060 Hb_003910_060 Hb_001862_180--Hb_003910_060 Hb_000803_260 Hb_000803_260 Hb_001862_180--Hb_000803_260 Hb_000388_090 Hb_000388_090 Hb_001862_180--Hb_000388_090 Hb_001329_140 Hb_001329_140 Hb_001862_180--Hb_001329_140 Hb_000331_560 Hb_000331_560 Hb_003203_030--Hb_000331_560 Hb_018118_010 Hb_018118_010 Hb_003203_030--Hb_018118_010 Hb_005348_010 Hb_005348_010 Hb_003203_030--Hb_005348_010 Hb_006816_430 Hb_006816_430 Hb_003203_030--Hb_006816_430 Hb_001259_020 Hb_001259_020 Hb_003203_030--Hb_001259_020 Hb_027346_010 Hb_027346_010 Hb_001205_230--Hb_027346_010 Hb_001004_060 Hb_001004_060 Hb_001205_230--Hb_001004_060 Hb_000281_090 Hb_000281_090 Hb_001205_230--Hb_000281_090 Hb_009767_080 Hb_009767_080 Hb_001205_230--Hb_009767_080 Hb_009486_060 Hb_009486_060 Hb_001205_230--Hb_009486_060 Hb_000035_290 Hb_000035_290 Hb_001205_230--Hb_000035_290 Hb_000366_040 Hb_000366_040 Hb_003910_060--Hb_000366_040 Hb_002316_160 Hb_002316_160 Hb_003910_060--Hb_002316_160 Hb_003910_060--Hb_000388_090 Hb_002055_040 Hb_002055_040 Hb_003910_060--Hb_002055_040 Hb_002063_020 Hb_002063_020 Hb_003910_060--Hb_002063_020 Hb_000803_260--Hb_001329_140 Hb_000318_390 Hb_000318_390 Hb_000803_260--Hb_000318_390 Hb_000684_250 Hb_000684_250 Hb_000803_260--Hb_000684_250 Hb_001472_090 Hb_001472_090 Hb_000803_260--Hb_001472_090 Hb_005901_020 Hb_005901_020 Hb_000803_260--Hb_005901_020 Hb_001357_020 Hb_001357_020 Hb_000388_090--Hb_001357_020 Hb_005736_020 Hb_005736_020 Hb_000388_090--Hb_005736_020 Hb_000388_090--Hb_002063_020 Hb_028912_050 Hb_028912_050 Hb_000388_090--Hb_028912_050 Hb_002099_080 Hb_002099_080 Hb_000388_090--Hb_002099_080 Hb_000028_390 Hb_000028_390 Hb_000388_090--Hb_000028_390 Hb_001329_140--Hb_000684_250 Hb_003168_110 Hb_003168_110 Hb_001329_140--Hb_003168_110 Hb_000037_190 Hb_000037_190 Hb_001329_140--Hb_000037_190 Hb_000457_260 Hb_000457_260 Hb_001329_140--Hb_000457_260 Hb_000590_050 Hb_000590_050 Hb_001329_140--Hb_000590_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.78846 1.62633 0.824705 0.907606 1.08781 1.78097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.7464 0.871442 1.50638 1.60629 2.27803

CAGE analysis