Hb_001472_090

Information

Type transcription factor
Description TF Family: ARID
Location Contig1472: 138956-151160
Sequence    

Annotation

kegg
ID rcu:RCOM_1687390
description DNA binding protein, putative
nr
ID XP_012086861.1
description PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9LDD4
description AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1
trembl
ID A0A067JN42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20567 PE=4 SV=1
Gene Ontology
ID GO:0043231
description at-rich interactive domain-containing protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11925: 139288-139874 , PASA_asmbl_11926: 139919-140026 , PASA_asmbl_11927: 150320-150985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001472_090 0.0 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
2 Hb_004228_010 0.0690172025 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
3 Hb_000574_070 0.0696553941 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
4 Hb_000803_260 0.079356829 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
5 Hb_014267_010 0.0795865441 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
6 Hb_000684_250 0.0825493886 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
7 Hb_000540_060 0.0833399005 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
8 Hb_000574_100 0.0839251901 - - DEAD-box protein abstrakt [Populus trichocarpa]
9 Hb_001700_040 0.0850913202 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
10 Hb_001967_030 0.0853407546 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
11 Hb_000922_370 0.0866971596 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
12 Hb_117552_010 0.0868455154 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000189_110 0.0881184913 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04750, mitochondrial [Jatropha curcas]
14 Hb_001329_140 0.0881987802 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
15 Hb_000563_640 0.0887433816 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
16 Hb_009476_040 0.0896549603 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003440_050 0.0906182717 - - hypothetical protein JCGZ_05806 [Jatropha curcas]
18 Hb_002493_020 0.0924192149 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
19 Hb_000183_020 0.0927127954 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
20 Hb_003216_080 0.0944198845 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]

Gene co-expression network

sample Hb_001472_090 Hb_001472_090 Hb_004228_010 Hb_004228_010 Hb_001472_090--Hb_004228_010 Hb_000574_070 Hb_000574_070 Hb_001472_090--Hb_000574_070 Hb_000803_260 Hb_000803_260 Hb_001472_090--Hb_000803_260 Hb_014267_010 Hb_014267_010 Hb_001472_090--Hb_014267_010 Hb_000684_250 Hb_000684_250 Hb_001472_090--Hb_000684_250 Hb_000540_060 Hb_000540_060 Hb_001472_090--Hb_000540_060 Hb_004306_080 Hb_004306_080 Hb_004228_010--Hb_004306_080 Hb_000796_040 Hb_000796_040 Hb_004228_010--Hb_000796_040 Hb_004228_010--Hb_014267_010 Hb_010417_050 Hb_010417_050 Hb_004228_010--Hb_010417_050 Hb_002493_020 Hb_002493_020 Hb_004228_010--Hb_002493_020 Hb_003488_030 Hb_003488_030 Hb_000574_070--Hb_003488_030 Hb_001700_040 Hb_001700_040 Hb_000574_070--Hb_001700_040 Hb_000544_050 Hb_000544_050 Hb_000574_070--Hb_000544_050 Hb_001913_060 Hb_001913_060 Hb_000574_070--Hb_001913_060 Hb_000574_070--Hb_010417_050 Hb_001329_140 Hb_001329_140 Hb_000803_260--Hb_001329_140 Hb_000318_390 Hb_000318_390 Hb_000803_260--Hb_000318_390 Hb_001862_180 Hb_001862_180 Hb_000803_260--Hb_001862_180 Hb_000803_260--Hb_000684_250 Hb_005901_020 Hb_005901_020 Hb_000803_260--Hb_005901_020 Hb_012656_030 Hb_012656_030 Hb_014267_010--Hb_012656_030 Hb_014267_010--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_014267_010--Hb_001967_030 Hb_000796_030 Hb_000796_030 Hb_014267_010--Hb_000796_030 Hb_014267_010--Hb_010417_050 Hb_000684_250--Hb_001329_140 Hb_003168_110 Hb_003168_110 Hb_000684_250--Hb_003168_110 Hb_002235_300 Hb_002235_300 Hb_000684_250--Hb_002235_300 Hb_009767_080 Hb_009767_080 Hb_000684_250--Hb_009767_080 Hb_002253_080 Hb_002253_080 Hb_000684_250--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_000684_250--Hb_002267_140 Hb_000540_060--Hb_001967_030 Hb_025194_040 Hb_025194_040 Hb_000540_060--Hb_025194_040 Hb_002784_110 Hb_002784_110 Hb_000540_060--Hb_002784_110 Hb_007576_120 Hb_007576_120 Hb_000540_060--Hb_007576_120 Hb_005496_110 Hb_005496_110 Hb_000540_060--Hb_005496_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.43214 7.69301 2.03209 4.17422 5.33201 9.68681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.73763 2.83662 6.30496 4.11681 5.7212

CAGE analysis