Hb_003488_030

Information

Type -
Description -
Location Contig3488: 73341-79736
Sequence    

Annotation

kegg
ID rcu:RCOM_0665610
description Protein CPR-5, putative
nr
ID XP_012075210.1
description PREDICTED: protein CPR-5 [Jatropha curcas]
swissprot
ID Q9LV85
description Protein CPR-5 OS=Arabidopsis thaliana GN=CPR5 PE=1 SV=1
trembl
ID A0A067KSK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09389 PE=4 SV=1
Gene Ontology
ID GO:0006952
description protein cpr-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36298: 61762-79723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003488_030 0.0 - - PREDICTED: protein CPR-5 [Jatropha curcas]
2 Hb_000574_070 0.0809659245 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
3 Hb_000127_040 0.0815471732 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
4 Hb_000166_130 0.0841281741 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003029_110 0.0860763914 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
6 Hb_000201_110 0.0882806657 - - hypothetical protein JCGZ_21690 [Jatropha curcas]
7 Hb_003966_030 0.0885837449 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
8 Hb_005731_030 0.0886499855 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
9 Hb_004935_030 0.0909768669 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
10 Hb_010222_050 0.0918683601 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
11 Hb_000820_170 0.092705706 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
12 Hb_000457_260 0.0930197449 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
13 Hb_031284_040 0.093126662 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
14 Hb_001199_100 0.0940655412 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
15 Hb_003362_070 0.0943288898 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
16 Hb_000183_020 0.0950972253 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
17 Hb_004102_140 0.0962845612 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003044_020 0.0964315164 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
19 Hb_000574_100 0.0966733467 - - DEAD-box protein abstrakt [Populus trichocarpa]
20 Hb_004228_010 0.0966932914 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]

Gene co-expression network

sample Hb_003488_030 Hb_003488_030 Hb_000574_070 Hb_000574_070 Hb_003488_030--Hb_000574_070 Hb_000127_040 Hb_000127_040 Hb_003488_030--Hb_000127_040 Hb_000166_130 Hb_000166_130 Hb_003488_030--Hb_000166_130 Hb_003029_110 Hb_003029_110 Hb_003488_030--Hb_003029_110 Hb_000201_110 Hb_000201_110 Hb_003488_030--Hb_000201_110 Hb_003966_030 Hb_003966_030 Hb_003488_030--Hb_003966_030 Hb_001472_090 Hb_001472_090 Hb_000574_070--Hb_001472_090 Hb_001700_040 Hb_001700_040 Hb_000574_070--Hb_001700_040 Hb_000544_050 Hb_000544_050 Hb_000574_070--Hb_000544_050 Hb_001913_060 Hb_001913_060 Hb_000574_070--Hb_001913_060 Hb_010417_050 Hb_010417_050 Hb_000574_070--Hb_010417_050 Hb_002213_070 Hb_002213_070 Hb_000127_040--Hb_002213_070 Hb_004935_030 Hb_004935_030 Hb_000127_040--Hb_004935_030 Hb_007803_050 Hb_007803_050 Hb_000127_040--Hb_007803_050 Hb_000457_260 Hb_000457_260 Hb_000127_040--Hb_000457_260 Hb_032050_040 Hb_032050_040 Hb_000127_040--Hb_032050_040 Hb_054865_150 Hb_054865_150 Hb_000127_040--Hb_054865_150 Hb_000166_130--Hb_003029_110 Hb_000343_120 Hb_000343_120 Hb_000166_130--Hb_000343_120 Hb_001195_320 Hb_001195_320 Hb_000166_130--Hb_001195_320 Hb_000035_290 Hb_000035_290 Hb_000166_130--Hb_000035_290 Hb_003371_110 Hb_003371_110 Hb_000166_130--Hb_003371_110 Hb_001199_100 Hb_001199_100 Hb_000166_130--Hb_001199_100 Hb_003029_110--Hb_001195_320 Hb_005731_030 Hb_005731_030 Hb_003029_110--Hb_005731_030 Hb_003029_110--Hb_000343_120 Hb_010222_050 Hb_010222_050 Hb_003029_110--Hb_010222_050 Hb_003029_110--Hb_003371_110 Hb_012799_030 Hb_012799_030 Hb_000201_110--Hb_012799_030 Hb_009548_020 Hb_009548_020 Hb_000201_110--Hb_009548_020 Hb_001329_140 Hb_001329_140 Hb_000201_110--Hb_001329_140 Hb_028912_050 Hb_028912_050 Hb_000201_110--Hb_028912_050 Hb_006649_050 Hb_006649_050 Hb_000201_110--Hb_006649_050 Hb_001675_180 Hb_001675_180 Hb_000201_110--Hb_001675_180 Hb_003362_070 Hb_003362_070 Hb_003966_030--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_003966_030--Hb_004102_140 Hb_001617_060 Hb_001617_060 Hb_003966_030--Hb_001617_060 Hb_000613_080 Hb_000613_080 Hb_003966_030--Hb_000613_080 Hb_003044_020 Hb_003044_020 Hb_003966_030--Hb_003044_020 Hb_000347_130 Hb_000347_130 Hb_003966_030--Hb_000347_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.97687 11.2239 5.55742 8.28351 10.3459 21.7828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.6903 7.22769 10.6373 8.02433 8.18611

CAGE analysis