Hb_001205_230

Information

Type -
Description -
Location Contig1205: 156046-159595
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa005327mg
description hypothetical protein
nr
ID XP_012081405.1
description PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
swissprot
ID Q9SCQ7
description Acidic leucine-rich nuclear phosphoprotein 32-related protein OS=Arabidopsis thaliana GN=At3g50690 PE=2 SV=1
trembl
ID A0A067K1F7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19112 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06352: 156889-159577 , PASA_asmbl_06353: 158846-159625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_230 0.0 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
2 Hb_027346_010 0.0545915729 - - -
3 Hb_001004_060 0.0605353945 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
4 Hb_000281_090 0.0667754765 transcription factor TF Family: SNF2 hypothetical protein PRUPE_ppa000063mg [Prunus persica]
5 Hb_009767_080 0.0688121615 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
6 Hb_009486_060 0.069521196 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
7 Hb_000035_290 0.0743157891 - - RNA recognition motif-containing family protein [Populus trichocarpa]
8 Hb_000890_050 0.0761085412 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
9 Hb_004182_050 0.076770287 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
10 Hb_001862_180 0.0775166117 - - PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Jatropha curcas]
11 Hb_003206_130 0.0776831511 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
12 Hb_000318_390 0.077748127 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
13 Hb_000291_050 0.0792926416 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
14 Hb_002234_170 0.0796307175 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
15 Hb_004143_130 0.0798884817 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
16 Hb_000574_400 0.0806935068 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
17 Hb_004162_090 0.0815118251 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
18 Hb_005736_020 0.0818447852 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
19 Hb_000672_040 0.0824385873 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
20 Hb_004225_050 0.08274 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001205_230 Hb_001205_230 Hb_027346_010 Hb_027346_010 Hb_001205_230--Hb_027346_010 Hb_001004_060 Hb_001004_060 Hb_001205_230--Hb_001004_060 Hb_000281_090 Hb_000281_090 Hb_001205_230--Hb_000281_090 Hb_009767_080 Hb_009767_080 Hb_001205_230--Hb_009767_080 Hb_009486_060 Hb_009486_060 Hb_001205_230--Hb_009486_060 Hb_000035_290 Hb_000035_290 Hb_001205_230--Hb_000035_290 Hb_003470_080 Hb_003470_080 Hb_027346_010--Hb_003470_080 Hb_027346_010--Hb_009486_060 Hb_027346_010--Hb_000281_090 Hb_006816_430 Hb_006816_430 Hb_027346_010--Hb_006816_430 Hb_000291_050 Hb_000291_050 Hb_027346_010--Hb_000291_050 Hb_000329_710 Hb_000329_710 Hb_001004_060--Hb_000329_710 Hb_000792_010 Hb_000792_010 Hb_001004_060--Hb_000792_010 Hb_000327_270 Hb_000327_270 Hb_001004_060--Hb_000327_270 Hb_001999_290 Hb_001999_290 Hb_001004_060--Hb_001999_290 Hb_005736_020 Hb_005736_020 Hb_001004_060--Hb_005736_020 Hb_007943_110 Hb_007943_110 Hb_000281_090--Hb_007943_110 Hb_001008_120 Hb_001008_120 Hb_000281_090--Hb_001008_120 Hb_000281_090--Hb_001004_060 Hb_004162_090 Hb_004162_090 Hb_000281_090--Hb_004162_090 Hb_019430_020 Hb_019430_020 Hb_009767_080--Hb_019430_020 Hb_000890_050 Hb_000890_050 Hb_009767_080--Hb_000890_050 Hb_000684_250 Hb_000684_250 Hb_009767_080--Hb_000684_250 Hb_009898_010 Hb_009898_010 Hb_009767_080--Hb_009898_010 Hb_000321_150 Hb_000321_150 Hb_009767_080--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_009767_080--Hb_000069_470 Hb_008221_180 Hb_008221_180 Hb_009486_060--Hb_008221_180 Hb_000574_400 Hb_000574_400 Hb_009486_060--Hb_000574_400 Hb_002234_170 Hb_002234_170 Hb_009486_060--Hb_002234_170 Hb_001671_010 Hb_001671_010 Hb_009486_060--Hb_001671_010 Hb_000166_130 Hb_000166_130 Hb_000035_290--Hb_000166_130 Hb_000343_120 Hb_000343_120 Hb_000035_290--Hb_000343_120 Hb_025194_040 Hb_025194_040 Hb_000035_290--Hb_025194_040 Hb_005496_110 Hb_005496_110 Hb_000035_290--Hb_005496_110 Hb_000395_130 Hb_000395_130 Hb_000035_290--Hb_000395_130 Hb_002784_110 Hb_002784_110 Hb_000035_290--Hb_002784_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.2797 58.7938 20.2853 31.1893 47.8672 49.6452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.3534 37.7967 46.7136 42.6859 65.7727

CAGE analysis