Hb_000574_400

Information

Type -
Description -
Location Contig574: 353536-355710
Sequence    

Annotation

kegg
ID pop:POPTR_0003s02590g
description hypothetical protein
nr
ID XP_012073145.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
swissprot
ID Q9LSB8
description Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
trembl
ID A0A067KYX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06115 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein at3g15930

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_400 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
2 Hb_002234_170 0.0682049686 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
3 Hb_002783_040 0.0751200133 transcription factor TF Family: IWS1 -
4 Hb_009486_060 0.0770226285 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
5 Hb_027346_010 0.0785169668 - - -
6 Hb_001205_230 0.0806935068 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
7 Hb_011671_410 0.0818083604 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
8 Hb_005486_030 0.0819445749 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
9 Hb_000270_670 0.0826279795 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
10 Hb_000291_050 0.0838527301 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
11 Hb_002725_120 0.084392596 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
12 Hb_005736_020 0.0843939259 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
13 Hb_001969_110 0.0850916537 - - PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Jatropha curcas]
14 Hb_006649_050 0.0871864595 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
15 Hb_009767_080 0.0880897358 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
16 Hb_001004_060 0.0890247969 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
17 Hb_000130_490 0.0908196742 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
18 Hb_000808_030 0.0908268245 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
19 Hb_062226_070 0.0910838318 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
20 Hb_000031_170 0.091242906 - - PREDICTED: abnormal long morphology protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_400 Hb_000574_400 Hb_002234_170 Hb_002234_170 Hb_000574_400--Hb_002234_170 Hb_002783_040 Hb_002783_040 Hb_000574_400--Hb_002783_040 Hb_009486_060 Hb_009486_060 Hb_000574_400--Hb_009486_060 Hb_027346_010 Hb_027346_010 Hb_000574_400--Hb_027346_010 Hb_001205_230 Hb_001205_230 Hb_000574_400--Hb_001205_230 Hb_011671_410 Hb_011671_410 Hb_000574_400--Hb_011671_410 Hb_003494_020 Hb_003494_020 Hb_002234_170--Hb_003494_020 Hb_002234_170--Hb_002783_040 Hb_000049_260 Hb_000049_260 Hb_002234_170--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002234_170--Hb_002798_070 Hb_006649_050 Hb_006649_050 Hb_002234_170--Hb_006649_050 Hb_002783_040--Hb_002798_070 Hb_000061_030 Hb_000061_030 Hb_002783_040--Hb_000061_030 Hb_002253_080 Hb_002253_080 Hb_002783_040--Hb_002253_080 Hb_009150_020 Hb_009150_020 Hb_002783_040--Hb_009150_020 Hb_001322_130 Hb_001322_130 Hb_002783_040--Hb_001322_130 Hb_009486_060--Hb_001205_230 Hb_008221_180 Hb_008221_180 Hb_009486_060--Hb_008221_180 Hb_009486_060--Hb_027346_010 Hb_009486_060--Hb_002234_170 Hb_001671_010 Hb_001671_010 Hb_009486_060--Hb_001671_010 Hb_027346_010--Hb_001205_230 Hb_003470_080 Hb_003470_080 Hb_027346_010--Hb_003470_080 Hb_000281_090 Hb_000281_090 Hb_027346_010--Hb_000281_090 Hb_006816_430 Hb_006816_430 Hb_027346_010--Hb_006816_430 Hb_000291_050 Hb_000291_050 Hb_027346_010--Hb_000291_050 Hb_001004_060 Hb_001004_060 Hb_001205_230--Hb_001004_060 Hb_001205_230--Hb_000281_090 Hb_009767_080 Hb_009767_080 Hb_001205_230--Hb_009767_080 Hb_000035_290 Hb_000035_290 Hb_001205_230--Hb_000035_290 Hb_000170_130 Hb_000170_130 Hb_011671_410--Hb_000170_130 Hb_005736_020 Hb_005736_020 Hb_011671_410--Hb_005736_020 Hb_000204_120 Hb_000204_120 Hb_011671_410--Hb_000204_120 Hb_000672_040 Hb_000672_040 Hb_011671_410--Hb_000672_040 Hb_062226_070 Hb_062226_070 Hb_011671_410--Hb_062226_070 Hb_001999_290 Hb_001999_290 Hb_011671_410--Hb_001999_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28755 1.999 0.783317 0.881287 1.22527 1.68566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.905149 1.29494 1.84569 0.842976 2.1945

CAGE analysis