Hb_000281_090

Information

Type transcription factor
Description TF Family: SNF2
Location Contig281: 82493-96319
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa000063mg
description hypothetical protein
nr
ID XP_007214350.1
description hypothetical protein PRUPE_ppa000063mg [Prunus persica]
swissprot
ID Q7X9V2
description Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Arabidopsis thaliana GN=PIE1 PE=1 SV=1
trembl
ID M5WPB8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000063mg PE=4 SV=1
Gene Ontology
ID GO:0003824
description protein photoperiod-independent early flowering 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29342: 83176-83426 , PASA_asmbl_29343: 84539-85294 , PASA_asmbl_29344: 86702-87572 , PASA_asmbl_29345: 87864-89233 , PASA_asmbl_29347: 91242-91654 , PASA_asmbl_29348: 91236-91654 , PASA_asmbl_29349: 95787-96315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000281_090 0.0 transcription factor TF Family: SNF2 hypothetical protein PRUPE_ppa000063mg [Prunus persica]
2 Hb_001205_230 0.0667754765 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
3 Hb_027346_010 0.0723058041 - - -
4 Hb_007943_110 0.0808304259 - - PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]
5 Hb_001008_120 0.0882663745 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
6 Hb_001004_060 0.0900439666 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
7 Hb_004162_090 0.0903926427 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
8 Hb_172632_080 0.0911126036 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
9 Hb_110291_010 0.0911442013 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000329_710 0.0912391404 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
11 Hb_001014_160 0.0921712513 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
12 Hb_001123_260 0.0923379063 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
13 Hb_004117_140 0.0943426573 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial [Populus euphratica]
14 Hb_005181_110 0.0950304683 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
15 Hb_000291_050 0.0953053193 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
16 Hb_000035_290 0.0957281632 - - RNA recognition motif-containing family protein [Populus trichocarpa]
17 Hb_005496_130 0.0958833794 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
18 Hb_005779_080 0.0959629515 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
19 Hb_006816_430 0.0969352815 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
20 Hb_035755_010 0.0979704155 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_000281_090 Hb_000281_090 Hb_001205_230 Hb_001205_230 Hb_000281_090--Hb_001205_230 Hb_027346_010 Hb_027346_010 Hb_000281_090--Hb_027346_010 Hb_007943_110 Hb_007943_110 Hb_000281_090--Hb_007943_110 Hb_001008_120 Hb_001008_120 Hb_000281_090--Hb_001008_120 Hb_001004_060 Hb_001004_060 Hb_000281_090--Hb_001004_060 Hb_004162_090 Hb_004162_090 Hb_000281_090--Hb_004162_090 Hb_001205_230--Hb_027346_010 Hb_001205_230--Hb_001004_060 Hb_009767_080 Hb_009767_080 Hb_001205_230--Hb_009767_080 Hb_009486_060 Hb_009486_060 Hb_001205_230--Hb_009486_060 Hb_000035_290 Hb_000035_290 Hb_001205_230--Hb_000035_290 Hb_003470_080 Hb_003470_080 Hb_027346_010--Hb_003470_080 Hb_027346_010--Hb_009486_060 Hb_006816_430 Hb_006816_430 Hb_027346_010--Hb_006816_430 Hb_000291_050 Hb_000291_050 Hb_027346_010--Hb_000291_050 Hb_014361_070 Hb_014361_070 Hb_007943_110--Hb_014361_070 Hb_000060_090 Hb_000060_090 Hb_007943_110--Hb_000060_090 Hb_003371_110 Hb_003371_110 Hb_007943_110--Hb_003371_110 Hb_006882_020 Hb_006882_020 Hb_007943_110--Hb_006882_020 Hb_003029_110 Hb_003029_110 Hb_007943_110--Hb_003029_110 Hb_006909_070 Hb_006909_070 Hb_007943_110--Hb_006909_070 Hb_028912_050 Hb_028912_050 Hb_001008_120--Hb_028912_050 Hb_005736_020 Hb_005736_020 Hb_001008_120--Hb_005736_020 Hb_002263_020 Hb_002263_020 Hb_001008_120--Hb_002263_020 Hb_001157_240 Hb_001157_240 Hb_001008_120--Hb_001157_240 Hb_000720_050 Hb_000720_050 Hb_001008_120--Hb_000720_050 Hb_005686_090 Hb_005686_090 Hb_001008_120--Hb_005686_090 Hb_000329_710 Hb_000329_710 Hb_001004_060--Hb_000329_710 Hb_000792_010 Hb_000792_010 Hb_001004_060--Hb_000792_010 Hb_000327_270 Hb_000327_270 Hb_001004_060--Hb_000327_270 Hb_001999_290 Hb_001999_290 Hb_001004_060--Hb_001999_290 Hb_001004_060--Hb_005736_020 Hb_001638_270 Hb_001638_270 Hb_004162_090--Hb_001638_270 Hb_004162_090--Hb_000035_290 Hb_004162_090--Hb_001205_230 Hb_004162_090--Hb_027346_010 Hb_005699_090 Hb_005699_090 Hb_004162_090--Hb_005699_090 Hb_025194_040 Hb_025194_040 Hb_004162_090--Hb_025194_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.88142 1.82727 0.716842 1.14789 1.58271 2.12962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.15943 1.77562 1.17612 1.3391 2.42649

CAGE analysis