Hb_001259_020

Information

Type -
Description -
Location Contig1259: 26824-31250
Sequence    

Annotation

kegg
ID rcu:RCOM_0003540
description protein translocase, putative
nr
ID XP_012081167.1
description PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
swissprot
ID Q6S5G3
description Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1
trembl
ID A0A067KDC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17012 PE=4 SV=1
Gene Ontology
ID GO:0005622
description translocase of chloroplast chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07909: 26944-31230
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001259_020 0.0 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
2 Hb_000661_030 0.0727462981 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
3 Hb_003203_030 0.0780912158 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
4 Hb_000816_100 0.0808008433 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000331_560 0.0826947906 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
6 Hb_000627_250 0.0891477315 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
7 Hb_001498_010 0.0894289546 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
8 Hb_018118_010 0.092309635 - - DNA polymerase I, putative [Ricinus communis]
9 Hb_000033_110 0.0957835393 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
10 Hb_000679_020 0.0960938433 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
11 Hb_000906_100 0.0964281337 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
12 Hb_000041_090 0.0987556848 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
13 Hb_000300_120 0.1009304623 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
14 Hb_000261_060 0.1012755131 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
15 Hb_009486_060 0.1038043063 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
16 Hb_000015_100 0.1042553815 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
17 Hb_000346_060 0.1042668625 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
18 Hb_001089_060 0.1067251285 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A isoform X1 [Jatropha curcas]
19 Hb_002027_090 0.1077049647 - - -
20 Hb_007441_130 0.1079478421 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001259_020 Hb_001259_020 Hb_000661_030 Hb_000661_030 Hb_001259_020--Hb_000661_030 Hb_003203_030 Hb_003203_030 Hb_001259_020--Hb_003203_030 Hb_000816_100 Hb_000816_100 Hb_001259_020--Hb_000816_100 Hb_000331_560 Hb_000331_560 Hb_001259_020--Hb_000331_560 Hb_000627_250 Hb_000627_250 Hb_001259_020--Hb_000627_250 Hb_001498_010 Hb_001498_010 Hb_001259_020--Hb_001498_010 Hb_000679_020 Hb_000679_020 Hb_000661_030--Hb_000679_020 Hb_000027_190 Hb_000027_190 Hb_000661_030--Hb_000027_190 Hb_188126_010 Hb_188126_010 Hb_000661_030--Hb_188126_010 Hb_000815_170 Hb_000815_170 Hb_000661_030--Hb_000815_170 Hb_000906_100 Hb_000906_100 Hb_000661_030--Hb_000906_100 Hb_003203_030--Hb_000331_560 Hb_018118_010 Hb_018118_010 Hb_003203_030--Hb_018118_010 Hb_005348_010 Hb_005348_010 Hb_003203_030--Hb_005348_010 Hb_006816_430 Hb_006816_430 Hb_003203_030--Hb_006816_430 Hb_001862_180 Hb_001862_180 Hb_003203_030--Hb_001862_180 Hb_048141_020 Hb_048141_020 Hb_000816_100--Hb_048141_020 Hb_001089_060 Hb_001089_060 Hb_000816_100--Hb_001089_060 Hb_023278_010 Hb_023278_010 Hb_000816_100--Hb_023278_010 Hb_021346_030 Hb_021346_030 Hb_000816_100--Hb_021346_030 Hb_011931_060 Hb_011931_060 Hb_000816_100--Hb_011931_060 Hb_002600_060 Hb_002600_060 Hb_000331_560--Hb_002600_060 Hb_000331_560--Hb_018118_010 Hb_003506_050 Hb_003506_050 Hb_000331_560--Hb_003506_050 Hb_000300_120 Hb_000300_120 Hb_000331_560--Hb_000300_120 Hb_009252_040 Hb_009252_040 Hb_000331_560--Hb_009252_040 Hb_000948_170 Hb_000948_170 Hb_000627_250--Hb_000948_170 Hb_031284_070 Hb_031284_070 Hb_000627_250--Hb_031284_070 Hb_000627_250--Hb_021346_030 Hb_000015_100 Hb_000015_100 Hb_000627_250--Hb_000015_100 Hb_025557_050 Hb_025557_050 Hb_000627_250--Hb_025557_050 Hb_000039_150 Hb_000039_150 Hb_001498_010--Hb_000039_150 Hb_000037_190 Hb_000037_190 Hb_001498_010--Hb_000037_190 Hb_004680_120 Hb_004680_120 Hb_001498_010--Hb_004680_120 Hb_001498_010--Hb_003203_030 Hb_002055_040 Hb_002055_040 Hb_001498_010--Hb_002055_040 Hb_004003_040 Hb_004003_040 Hb_001498_010--Hb_004003_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9891 11.3483 8.68513 8.18763 14.7972 13.7815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.74912 7.85484 9.97488 8.19962 26.8468

CAGE analysis