Hb_025557_050

Information

Type -
Description -
Location Contig25557: 26379-33286
Sequence    

Annotation

kegg
ID vvi:100243404
description pentatricopeptide repeat-containing protein At1g74630
nr
ID XP_012080266.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
swissprot
ID Q9CA54
description Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
trembl
ID A0A067K574
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11623 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at1g74630

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26658: 29077-33298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025557_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
2 Hb_017151_010 0.0473575065 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
3 Hb_001789_190 0.0573874558 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
4 Hb_010812_050 0.0696091871 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
5 Hb_008059_010 0.072293991 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
6 Hb_004097_070 0.074581445 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
7 Hb_031284_010 0.077325362 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
8 Hb_132840_110 0.0776963189 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
9 Hb_001619_050 0.0780297293 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
10 Hb_032202_080 0.0787897408 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
11 Hb_000864_030 0.0806403757 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
12 Hb_000346_060 0.0811987582 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
13 Hb_000061_020 0.0826451312 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
14 Hb_000640_160 0.0840255732 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
15 Hb_003462_070 0.0858910845 - - arsenical pump-driving atpase, putative [Ricinus communis]
16 Hb_004970_190 0.0877018432 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_000115_280 0.0877646976 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
18 Hb_000665_120 0.088919555 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
19 Hb_007765_100 0.0889296534 - - PREDICTED: helicase SKI2W [Jatropha curcas]
20 Hb_000445_140 0.0893617269 - - hypothetical protein RCOM_0561550 [Ricinus communis]

Gene co-expression network

sample Hb_025557_050 Hb_025557_050 Hb_017151_010 Hb_017151_010 Hb_025557_050--Hb_017151_010 Hb_001789_190 Hb_001789_190 Hb_025557_050--Hb_001789_190 Hb_010812_050 Hb_010812_050 Hb_025557_050--Hb_010812_050 Hb_008059_010 Hb_008059_010 Hb_025557_050--Hb_008059_010 Hb_004097_070 Hb_004097_070 Hb_025557_050--Hb_004097_070 Hb_031284_010 Hb_031284_010 Hb_025557_050--Hb_031284_010 Hb_053079_020 Hb_053079_020 Hb_017151_010--Hb_053079_020 Hb_017151_010--Hb_001789_190 Hb_000115_280 Hb_000115_280 Hb_017151_010--Hb_000115_280 Hb_001619_050 Hb_001619_050 Hb_017151_010--Hb_001619_050 Hb_032202_080 Hb_032202_080 Hb_017151_010--Hb_032202_080 Hb_001789_190--Hb_004097_070 Hb_132840_110 Hb_132840_110 Hb_001789_190--Hb_132840_110 Hb_001001_080 Hb_001001_080 Hb_001789_190--Hb_001001_080 Hb_001021_220 Hb_001021_220 Hb_001789_190--Hb_001021_220 Hb_000856_420 Hb_000856_420 Hb_010812_050--Hb_000856_420 Hb_007479_070 Hb_007479_070 Hb_010812_050--Hb_007479_070 Hb_000849_020 Hb_000849_020 Hb_010812_050--Hb_000849_020 Hb_010812_050--Hb_001789_190 Hb_002027_090 Hb_002027_090 Hb_010812_050--Hb_002027_090 Hb_008059_010--Hb_031284_010 Hb_007765_100 Hb_007765_100 Hb_008059_010--Hb_007765_100 Hb_008059_010--Hb_000115_280 Hb_000457_230 Hb_000457_230 Hb_008059_010--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_008059_010--Hb_000836_410 Hb_000205_260 Hb_000205_260 Hb_008059_010--Hb_000205_260 Hb_000200_380 Hb_000200_380 Hb_004097_070--Hb_000200_380 Hb_007657_010 Hb_007657_010 Hb_004097_070--Hb_007657_010 Hb_000346_060 Hb_000346_060 Hb_004097_070--Hb_000346_060 Hb_019280_030 Hb_019280_030 Hb_004097_070--Hb_019280_030 Hb_001635_040 Hb_001635_040 Hb_004097_070--Hb_001635_040 Hb_031284_010--Hb_000115_280 Hb_003186_020 Hb_003186_020 Hb_031284_010--Hb_003186_020 Hb_138435_010 Hb_138435_010 Hb_031284_010--Hb_138435_010 Hb_000120_210 Hb_000120_210 Hb_031284_010--Hb_000120_210 Hb_031284_010--Hb_000457_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8893 13.3515 20.2174 11.9494 18.3004 15.7412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0547 9.93004 9.40635 8.92299 23.7548

CAGE analysis