Hb_007479_070

Information

Type -
Description -
Location Contig7479: 52249-78807
Sequence    

Annotation

kegg
ID rcu:RCOM_1662980
description peroxisomal abc transporter, putative (EC:3.6.3.44)
nr
ID AHC69414.1
description peroxisomal membrane protein [Hevea brasiliensis]
swissprot
ID Q94FB9
description ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1
trembl
ID V9TJF4
description Peroxisomal membrane protein OS=Hevea brasiliensis GN=PMP1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter d family member 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56731: 52340-53174 , PASA_asmbl_56732: 54251-57065 , PASA_asmbl_56733: 73970-76408
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007479_070 0.0 - - peroxisomal membrane protein [Hevea brasiliensis]
2 Hb_010812_050 0.0715265921 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
3 Hb_000856_420 0.0908677145 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_025557_050 0.0959517704 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
5 Hb_001123_260 0.0980580794 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
6 Hb_002686_240 0.098325498 - - Thioredoxin, putative [Ricinus communis]
7 Hb_008059_010 0.099294209 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
8 Hb_004097_070 0.099374708 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
9 Hb_000527_010 0.1003539497 - - katanin P80 subunit, putative [Ricinus communis]
10 Hb_006909_070 0.1018277758 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_008887_020 0.1024855599 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
12 Hb_000085_140 0.102544445 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
13 Hb_007305_020 0.1034833345 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
14 Hb_000834_200 0.1044388448 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
15 Hb_000318_120 0.1056738497 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
16 Hb_001662_140 0.1068767109 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
17 Hb_000205_260 0.1073233275 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
18 Hb_001789_190 0.1077743021 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
19 Hb_031284_010 0.1079294872 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
20 Hb_022256_060 0.1079737545 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]

Gene co-expression network

sample Hb_007479_070 Hb_007479_070 Hb_010812_050 Hb_010812_050 Hb_007479_070--Hb_010812_050 Hb_000856_420 Hb_000856_420 Hb_007479_070--Hb_000856_420 Hb_025557_050 Hb_025557_050 Hb_007479_070--Hb_025557_050 Hb_001123_260 Hb_001123_260 Hb_007479_070--Hb_001123_260 Hb_002686_240 Hb_002686_240 Hb_007479_070--Hb_002686_240 Hb_008059_010 Hb_008059_010 Hb_007479_070--Hb_008059_010 Hb_010812_050--Hb_000856_420 Hb_010812_050--Hb_025557_050 Hb_000849_020 Hb_000849_020 Hb_010812_050--Hb_000849_020 Hb_001789_190 Hb_001789_190 Hb_010812_050--Hb_001789_190 Hb_002027_090 Hb_002027_090 Hb_010812_050--Hb_002027_090 Hb_008695_110 Hb_008695_110 Hb_000856_420--Hb_008695_110 Hb_000856_420--Hb_008059_010 Hb_000834_200 Hb_000834_200 Hb_000856_420--Hb_000834_200 Hb_022256_060 Hb_022256_060 Hb_000856_420--Hb_022256_060 Hb_000343_250 Hb_000343_250 Hb_000856_420--Hb_000343_250 Hb_017151_010 Hb_017151_010 Hb_025557_050--Hb_017151_010 Hb_025557_050--Hb_001789_190 Hb_025557_050--Hb_008059_010 Hb_004097_070 Hb_004097_070 Hb_025557_050--Hb_004097_070 Hb_031284_010 Hb_031284_010 Hb_025557_050--Hb_031284_010 Hb_005779_080 Hb_005779_080 Hb_001123_260--Hb_005779_080 Hb_005489_020 Hb_005489_020 Hb_001123_260--Hb_005489_020 Hb_021443_040 Hb_021443_040 Hb_001123_260--Hb_021443_040 Hb_006816_430 Hb_006816_430 Hb_001123_260--Hb_006816_430 Hb_007943_110 Hb_007943_110 Hb_001123_260--Hb_007943_110 Hb_001123_260--Hb_004097_070 Hb_000559_020 Hb_000559_020 Hb_002686_240--Hb_000559_020 Hb_001348_190 Hb_001348_190 Hb_002686_240--Hb_001348_190 Hb_002686_240--Hb_010812_050 Hb_001662_140 Hb_001662_140 Hb_002686_240--Hb_001662_140 Hb_000205_260 Hb_000205_260 Hb_002686_240--Hb_000205_260 Hb_008059_010--Hb_031284_010 Hb_007765_100 Hb_007765_100 Hb_008059_010--Hb_007765_100 Hb_000115_280 Hb_000115_280 Hb_008059_010--Hb_000115_280 Hb_000457_230 Hb_000457_230 Hb_008059_010--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_008059_010--Hb_000836_410 Hb_008059_010--Hb_000205_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.31846 7.68978 7.14074 5.13694 7.85032 8.90802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.09008 4.53284 2.08809 3.07298 9.51113

CAGE analysis