Hb_021443_040

Information

Type -
Description -
Location Contig21443: 23922-26717
Sequence    

Annotation

kegg
ID rcu:RCOM_1498780
description acc synthase, putative (EC:4.4.1.14)
nr
ID XP_002510899.1
description acc synthase, putative [Ricinus communis]
swissprot
ID Q8GYY0
description Probable aminotransferase ACS12 OS=Arabidopsis thaliana GN=ACS12 PE=2 SV=2
trembl
ID B9R9M4
description Acc synthase, putative OS=Ricinus communis GN=RCOM_1498780 PE=3 SV=1
Gene Ontology
ID GO:0004069
description probable aminotransferase acs12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22145: 23976-26237 , PASA_asmbl_22146: 25496-25725
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021443_040 0.0 - - acc synthase, putative [Ricinus communis]
2 Hb_003929_110 0.0558189237 - - PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_005489_020 0.0620003068 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001004_060 0.0624141111 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
5 Hb_001123_260 0.0689458661 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
6 Hb_000329_370 0.0695601753 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
7 Hb_000343_250 0.070995818 - - PREDICTED: protein CASC3 [Jatropha curcas]
8 Hb_005779_080 0.0717594079 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
9 Hb_009270_020 0.0720845194 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
10 Hb_000044_040 0.0721434141 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
11 Hb_002849_100 0.0727532338 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
12 Hb_002732_040 0.0748711856 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
13 Hb_007645_100 0.0763378692 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
14 Hb_002218_090 0.0776129948 - - Poly(rC)-binding protein, putative [Ricinus communis]
15 Hb_000327_270 0.0777320351 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
16 Hb_002217_250 0.0782968573 - - conserved hypothetical protein [Ricinus communis]
17 Hb_188063_020 0.0787827363 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000958_140 0.0815127108 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]
19 Hb_007441_130 0.0831637634 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_002263_020 0.0839581889 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_021443_040 Hb_021443_040 Hb_003929_110 Hb_003929_110 Hb_021443_040--Hb_003929_110 Hb_005489_020 Hb_005489_020 Hb_021443_040--Hb_005489_020 Hb_001004_060 Hb_001004_060 Hb_021443_040--Hb_001004_060 Hb_001123_260 Hb_001123_260 Hb_021443_040--Hb_001123_260 Hb_000329_370 Hb_000329_370 Hb_021443_040--Hb_000329_370 Hb_000343_250 Hb_000343_250 Hb_021443_040--Hb_000343_250 Hb_003929_110--Hb_001123_260 Hb_002849_100 Hb_002849_100 Hb_003929_110--Hb_002849_100 Hb_000679_020 Hb_000679_020 Hb_003929_110--Hb_000679_020 Hb_000027_190 Hb_000027_190 Hb_003929_110--Hb_000027_190 Hb_000044_040 Hb_000044_040 Hb_003929_110--Hb_000044_040 Hb_005779_080 Hb_005779_080 Hb_005489_020--Hb_005779_080 Hb_005489_020--Hb_000329_370 Hb_001227_030 Hb_001227_030 Hb_005489_020--Hb_001227_030 Hb_002890_290 Hb_002890_290 Hb_005489_020--Hb_002890_290 Hb_003929_280 Hb_003929_280 Hb_005489_020--Hb_003929_280 Hb_000329_710 Hb_000329_710 Hb_001004_060--Hb_000329_710 Hb_000792_010 Hb_000792_010 Hb_001004_060--Hb_000792_010 Hb_000327_270 Hb_000327_270 Hb_001004_060--Hb_000327_270 Hb_001999_290 Hb_001999_290 Hb_001004_060--Hb_001999_290 Hb_001205_230 Hb_001205_230 Hb_001004_060--Hb_001205_230 Hb_005736_020 Hb_005736_020 Hb_001004_060--Hb_005736_020 Hb_001123_260--Hb_005779_080 Hb_001123_260--Hb_005489_020 Hb_006816_430 Hb_006816_430 Hb_001123_260--Hb_006816_430 Hb_007943_110 Hb_007943_110 Hb_001123_260--Hb_007943_110 Hb_004097_070 Hb_004097_070 Hb_001123_260--Hb_004097_070 Hb_012194_030 Hb_012194_030 Hb_000329_370--Hb_012194_030 Hb_010712_050 Hb_010712_050 Hb_000329_370--Hb_010712_050 Hb_011537_050 Hb_011537_050 Hb_000329_370--Hb_011537_050 Hb_002085_030 Hb_002085_030 Hb_000329_370--Hb_002085_030 Hb_000441_120 Hb_000441_120 Hb_000329_370--Hb_000441_120 Hb_002732_040 Hb_002732_040 Hb_000343_250--Hb_002732_040 Hb_000462_060 Hb_000462_060 Hb_000343_250--Hb_000462_060 Hb_000200_380 Hb_000200_380 Hb_000343_250--Hb_000200_380 Hb_008406_200 Hb_008406_200 Hb_000343_250--Hb_008406_200 Hb_000346_060 Hb_000346_060 Hb_000343_250--Hb_000346_060 Hb_004963_030 Hb_004963_030 Hb_000343_250--Hb_004963_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2344 17.2026 11.8109 10.4844 16.7995 15.9904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7904 11.0754 13.5034 14.9283 21.4119

CAGE analysis